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Name : gspD (SVI_4201) Accession : YP_003558950.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Virulence Product : general secretion pathway protein D Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 4804753 - 4806891 bp Length : 2139 bp Strand : - Note : - DNA sequence : ATGAATAATAAGAGTTTTCGCAGAAAATTAATTGCAGGACTTGTGATGGGAGCCGCTCTTTTAACTCCTACACTTGCTTG GTCAGAGCAATATGCGGCTAATTTTAAAGGAACTGATATCCAGGAATTTATCAATATCGTTGGTAAAAACCTCAACCGTA CCATTATTGTCGATCCCACGGTTCGCGGTAAGATCAATGTCCGCAGCTATGATCTACTCGATGATGAGCAATATTATCAA TTCTTCCTCAATGTGCTGCAGGTCTATGGTTATGCCGTCGTAGAGATGGATAACAATATCATCAAGGTGATCAAAGATAA GGATGCTAAAACAGCATCTATTCGTGTGGCTGATGATGATACTCCAGGTGTTGGCGATGAGATGGTGACTCGCATCGTGG CCCTATACAACACGGAAGCGAAACAACTTGCCCCTCTGCTACGTCAGCTTAATGATAATGCCGGCGGCGGTAACGTAGTT AACTATGATCCATCGAATGTCTTGATGATCTCTGGTCGCGCGGCCGTGGTAAACAAGCTGGTCGAAATTGTTCGTCGCGT CGACAAGCAAGGCGATACCGAAGTGAAGGTGGTCCCCCTCAACTTTGCATCTGCCGGTGAGATAGTTCGTATCATAGAGA CCTTAAATCGTGTAACTGGCAACAAGTCTCAGTCGAGTCAGGCGCCTAAAGTGGTTGCCGATGAGCGTATGAATGCCGTG ATTGTCAGTGGTGATGTGAAGGGCCGTCAACGCGTGGTCGAATTAATCAGGAAGCTAGACGCGGAGCAGGCCAGTACAGG TAATACTAAGGTTCGCTATCTGAGATATGCCAATGCAGAAGATCTTGTCGAAGTATTGATGGGCTTAGCCGATCAGCTGT CCAGCGATAAAGATGGTGGTGGTAAGCCAGGTGGTAATAAACGCCGTAAAGATATCAATATCATGGCCCATGCCGAGACG AATGCCCTTGTTATTACGGCGCAACCGGATCAGATGCGCACCATAGATAGCGTGATCAATCAGCTGGATATTCGTCGTGC TCAGGTATTAGTCGAGGCGATAATCGTTGAAGTGGCCGAGGGCGATGACGTTGGTTTCGGCATCCAGTGGGCTACGGCAT CGGGTGGTGGTACTCAGTTTAATAACTTAGGCCCGACAATTGGTGAGATTGGTGCCGGTGTCTGGTTGGCCAAGGATCAG AAAGCCTCACAGACATGTACAGGTTCAGGCGACAATAAAACCTGTACCGATAACCCGGATACTCCCGGTGACATCACACT GTTAGCCCAAGCGTTGGGTAAAGTTAATGGTATGGCCTGGGGAGTGGCCACAGGTGACTTCGCAGCCTTGATTCAGGCGG TATCTAGCGATACCAAGTCAAATGTATTGGCGACACCTTCTATCACGACTCTAGATAACCAGGAAGCCTCATTTATAGTG GGTGACGAGGTTCCCATTTTAACCGGTAGCCAGAGTTCGAGTAATGGCAACGAAAACCCTTTCACTACCGTCGAGCGTAA AGAGGTGGGGGTAAAGTTAAAAGTTATTCCCCAGATTAACGAAGGCAGCTCAGTTAAGCTGACTATTGAGCAGGAAGTTT CGGGTATCAATGGTAAGACTGCTGTCGATGTTACCTTTGCAACCCGTCGTTTGACCACTACTGTGATGGCTGACTCGGGT CAGATTGTCGTCTTAGGTGGCCTGATCAACGAAGAGGTGCAGGAGAGTGTGCAGAAGGTACCTTTCCTCGGTGATTTACC GCTAATTGGCCATCTGTTTAGGTCTTCATCTAGCAGTAAGAAGAAGAAAAACCTGATGATATTCATCAAGCCAACCATTA TTCGTGATGGCATCACAATGGAAGGCATAGCAGGTCGCAAGTATAACTATTTCCGTGCGCTGCAGTTAGAGCAGCAAGAG CGAGGCATTAATCTGATGCCGAATACCGATGTGCCTATACTCGAAGAGTGGAACCAGTCTGAATACCTGCCGCCTGAGGT CAATGATATTCTACAGCGCTACAAAGAGGGTAAAGGTCTGGAGACAAGAATGCGTAAGACAGACCCTGCCCTTAAGAGCA TCTCCGAGAGCAAGGAACACGATAAGTCTCTAGATACTGATGATAACGCCGATGAGTAA Protein sequence : MNNKSFRRKLIAGLVMGAALLTPTLAWSEQYAANFKGTDIQEFINIVGKNLNRTIIVDPTVRGKINVRSYDLLDDEQYYQ FFLNVLQVYGYAVVEMDNNIIKVIKDKDAKTASIRVADDDTPGVGDEMVTRIVALYNTEAKQLAPLLRQLNDNAGGGNVV NYDPSNVLMISGRAAVVNKLVEIVRRVDKQGDTEVKVVPLNFASAGEIVRIIETLNRVTGNKSQSSQAPKVVADERMNAV IVSGDVKGRQRVVELIRKLDAEQASTGNTKVRYLRYANAEDLVEVLMGLADQLSSDKDGGGKPGGNKRRKDINIMAHAET NALVITAQPDQMRTIDSVINQLDIRRAQVLVEAIIVEVAEGDDVGFGIQWATASGGGTQFNNLGPTIGEIGAGVWLAKDQ KASQTCTGSGDNKTCTDNPDTPGDITLLAQALGKVNGMAWGVATGDFAALIQAVSSDTKSNVLATPSITTLDNQEASFIV GDEVPILTGSQSSSNGNENPFTTVERKEVGVKLKVIPQINEGSSVKLTIEQEVSGINGKTAVDVTFATRRLTTTVMADSG QIVVLGGLINEEVQESVQKVPFLGDLPLIGHLFRSSSSSKKKKNLMIFIKPTIIRDGITMEGIAGRKYNYFRALQLEQQE RGINLMPNTDVPILEEWNQSEYLPPEVNDILQRYKEGKGLETRMRKTDPALKSISESKEHDKSLDTDDNADE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspD | CAE85234.1 | GspD, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 2e-142 | 51 |
| gspD | YP_854407.1 | type II secretion protein GspD | Not tested | PAI I APEC-O1 | Protein | 9e-150 | 51 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspD | YP_003558950.1 | general secretion pathway protein D | VFG2047 | Protein | 4e-141 | 51 |
