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Name : gspE (SVI_4200) Accession : YP_003558949.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Virulence Product : general secretion pathway protein E Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 4803189 - 4804760 bp Length : 1572 bp Strand : - Note : - DNA sequence : ATGAGTAATACTCAAATCCCTCAGAGTGATGAGCTGGCTTTAGTTTCTGAAGAGGTTTGGCAAGATGCTGAAATCGACAG TGATGAAGAGTATCGTTCCGATAGCAGGGAGCGCTTACCCTTCGCTTTCTCTCATCGTTTCTATGTGGTGCTAGATGCGG GTGTCGACGATGCTTTGACCTTGTATCATACCGCCGAGACTCCTTTGTCTGCTCTGCTAGAGGTTAGACGCTACACGGGG CGTGAACTGCCTTTGGTGCAGCTGGTACCGGCCGAATTTGAGGCTAGATTAACTCATGCATATCAGGCTAATTCTTCCGA GGCTCAGCAGTTGATGGAAGATATTGGCAATGAGATGGACCTGTATACGTTAGCCGAAGAGTTACCTCAGACAGAGGATC TGCTCGAAGGCGATGACGATGCGCCTATCATCAAGTTGATCAACGCCTTGTTATCGGAAGCGATCAAAGAGGAAGCCTCA GATATTCATATCGAGACCTATGAGAAGCAGCTAATTGTTCGCTTCCGGGTCGATGGCATGTTGAAAGAGGTGCTCAAGCC CAATCGTAAGCTTTCATCTTTATTGGTTTCTCGTATCAAGGTGATGGCACGTCTGGATATTGCTGAGAAGCGAGTACCCC AAGATGGTCGTATCTCACTGCGAATCGGTGGTCGTGCCGTCGATGTACGTGTGTCGACTATGCCGTCGAGTCACGGCGAG CGTGTGGTATTGCGCCTGCTGGACAAAAATACCGGTAACTTAGACCTAGTTCAACTTGGTATGACAGAGCAGATCCGTAT TCAATTCGATGAATTGATCCGCAAGCCCCATGGCATTATCTTGGTAACTGGTCCTACGGGCTCGGGTAAGAGTACAACTC TATATGCTGGTCTTAGCGAGCTGAACTCCAAAGACACCAATATTCTTACGGTTGAAGATCCTATCGAGTATGAACTTGAG GGGGTGGGTCAGACTCAGGTAAACGCTAAGGTTGACATGACGTTCGCTCGTGGCCTAAGAGCGATACTGCGACAAGATCC CGATGTGGTGATGATAGGTGAGATCCGTGACTTGGAAACGGCTCAGATTGCCGTCCAGGCATCATTAACTGGTCATATGG TGTTATCGACTCTTCACACTAATACCGCATCTGGTTCCATCACTCGCTTACAAGATATGGGGGTGGAGCCTTTCCTTGTC TCATCGAGTCTGTTGGGCGTGCTGGCCCAGCGTTTGATTCGAACCTTGTGCCCTAATTGTAAATCTGAACATGTACCCGA TCTTAGTGAACGTAAGTTACTCGGTCTTGTTGATGATGATCAAAGGATCATATATCGCGCCGAAGGCTGTAAGTCTTGTG GCAATAATGGTTATCGCGGTCGAACGGGTATTCATGAACTGCTTATCGTTAATGACGAAATCCGTGAACTTATCCATACA GGACGTGGTGAGTTAGCCATCGAGAAGCTTATTCGTCAAACCACACCGAGTATTCGTCATGATGGCATGAGTAAGGTTCT GGCCGGAAAAACCACCCTCGAAGAGGTGTTACGCGTTACTCGCGAGGAATAA Protein sequence : MSNTQIPQSDELALVSEEVWQDAEIDSDEEYRSDSRERLPFAFSHRFYVVLDAGVDDALTLYHTAETPLSALLEVRRYTG RELPLVQLVPAEFEARLTHAYQANSSEAQQLMEDIGNEMDLYTLAEELPQTEDLLEGDDDAPIIKLINALLSEAIKEEAS DIHIETYEKQLIVRFRVDGMLKEVLKPNRKLSSLLVSRIKVMARLDIAEKRVPQDGRISLRIGGRAVDVRVSTMPSSHGE RVVLRLLDKNTGNLDLVQLGMTEQIRIQFDELIRKPHGIILVTGPTGSGKSTTLYAGLSELNSKDTNILTVEDPIEYELE GVGQTQVNAKVDMTFARGLRAILRQDPDVVMIGEIRDLETAQIAVQASLTGHMVLSTLHTNTASGSITRLQDMGVEPFLV SSSLLGVLAQRLIRTLCPNCKSEHVPDLSERKLLGLVDDDQRIIYRAEGCKSCGNNGYRGRTGIHELLIVNDEIRELIHT GRGELAIEKLIRQTTPSIRHDGMSKVLAGKTTLEEVLRVTREE |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 6e-155 | 66 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 5e-155 | 66 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspE | YP_003558949.1 | general secretion pathway protein E | VFG2048 | Protein | 8e-156 | 66 |
| gspE | YP_003558949.1 | general secretion pathway protein E | VFG0182 | Protein | 2e-149 | 64 |
| gspE | YP_003558949.1 | general secretion pathway protein E | VFG1876 | Protein | 2e-137 | 58 |
| gspE | YP_003558949.1 | general secretion pathway protein E | VFG0112 | Protein | 4e-85 | 47 |
| gspE | YP_003558949.1 | general secretion pathway protein E | VFG2426 | Protein | 3e-77 | 45 |
