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Name : gspF (SVI_4199) Accession : YP_003558948.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Virulence Product : general secretion pathway protein F Function : - COG functional category : N : Cell motility COG ID : COG1459 EC number : - Position : 4801904 - 4803073 bp Length : 1170 bp Strand : - Note : - DNA sequence : GTGATAGAGGCGGATACCCCTCGTCATGCTCGTGGTCAGCTAAGAGATAAACGCTTGATGCCGTTAGAGATCAAGCCGGT TATCGAGAAAGAATCTAAGGCTCAGTCCGCAGGGAAAAGTCTTTTTCAGCGCGGTATATCCGTGGCAGAACTTGCACTCA TCACACGTCAAATCGCCACTCTGGTTGCGGCGGGGCTTCCCATTGAGGAGGCTTTGAAAGCGGTCGGTCAGCAGTGCGAG AAAGATCGTCTGGCCAGCATGGTCATGGCGGTGCGCTCTCGTGTGGTCGAAGGTTATAGTTTAGCCGACTCTATGGCTGA ATTCCCACATATCTTCGACGATCTCTATCGCGCCATGGTGGCATCGGGTGAAAAATCTGGTCATCTGGAGGTGGTGCTAA ATCGCTTGGCCGATTACACCGAACGTAGGCAGCAACTGAAAAGCAAGATGACTCAGGCGATGATCTATCCCATAGTATTA ACCGTTGTGGCCATAGGTGTTATTGGGATTCTACTGGCGGCGGTAGTGCCCCAGGTGGTTGGCCAGTTTGAACATATGGG CCAGCAGTTACCCTGGACGACTCAATTACTGATTGCATCGTCAGACTTTGTCAGAGACTACGGGCTTATTGTTTTAGGTG TGGTGGCCGGTGCATTTGTCTTGTTTAAACGCTTACTGACTAAACCAGAATATAGAATGAAGTATGATTCCTTGCTCCTC AAGCTACCGGTTATTAGCAAGATCAGTAAGGGACTCAATACGGCACGTTTCGCGAGAACCTTGAGTATCTTAGCGGCGAG CTCAGTGCCCCTGCTAGATGCGATGCGAATAGCTAGCGAAGTCTTGATTAATGTCAAGGTCAGAGCGGCGGTGGAAGAGG CTACGGCGCGAGTGCGTGAGGGAACAAGTTTAGGTGCAGCATTGACGAATACGAAACTTTTTCCGCCTATGATGCTCTAT ATGATCGCCTCGGGTGAAAAGAGTGGCCAGCTAGAACAGATGCTCGAGCGGGCTGCAGATAATCAGGACAGAGAGTTCGA GTCGAATGTCACTATAGCACTGGGGATATTTGAACCTATGTTGGTTGTGAGCATGGCAACAGTAGTGTTATTTATCGTCT TGGCTATTCTACAGCCAATTTTAGAGCTTAATAACATGGTCAGTGGTTAA Protein sequence : MIEADTPRHARGQLRDKRLMPLEIKPVIEKESKAQSAGKSLFQRGISVAELALITRQIATLVAAGLPIEEALKAVGQQCE KDRLASMVMAVRSRVVEGYSLADSMAEFPHIFDDLYRAMVASGEKSGHLEVVLNRLADYTERRQQLKSKMTQAMIYPIVL TVVAIGVIGILLAAVVPQVVGQFEHMGQQLPWTTQLLIASSDFVRDYGLIVLGVVAGAFVLFKRLLTKPEYRMKYDSLLL KLPVISKISKGLNTARFARTLSILAASSVPLLDAMRIASEVLINVKVRAAVEEATARVREGTSLGAALTNTKLFPPMMLY MIASGEKSGQLEQMLERAADNQDREFESNVTIALGIFEPMLVVSMATVVLFIVLAILQPILELNNMVSG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspF | YP_854405.1 | type II secretion protein GspF | Not tested | PAI I APEC-O1 | Protein | 7e-91 | 56 |
| gspF | CAE85232.1 | GspF, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 7e-91 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| gspF | YP_003558948.1 | general secretion pathway protein F | VFG2049 | Protein | 1e-87 | 56 |
| gspF | YP_003558948.1 | general secretion pathway protein F | VFG0181 | Protein | 4e-86 | 48 |
| gspF | YP_003558948.1 | general secretion pathway protein F | VFG1870 | Protein | 2e-77 | 44 |
