|
Name : SVI_0419 (SVI_0419) Accession : YP_003555168.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Virulence Product : KpsF/GutQ family carbohydrate isomerase Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG0794 EC number : - Position : 485840 - 486817 bp Length : 978 bp Strand : - Note : - DNA sequence : ATGCTAGATGTAAATAAATTACGCCAATGGGGCAAGAAAGTTATCGATGTGGAGCGAAAGGCTCTCGATAACTTATATCA ATATGTAGATTCGGCTGAGTTTGCCGCTGCCTGTAAATTGATCTTCGAGTGCACGGGCAAGGTCATCGTCATGGGGATGG GCAAGTCAGGTCATATCGGCAATAAAATTTCGGCTACCTTCGCCAGCACAGGAACACCCGCATTTTTTGTTCATCCCGGT GAAGCCAGTCATGGGGATCTGGGCGTACTCAGTGAGGACGATATCATCTTAGCCATCTCCAACTCTGGAGAAGCCTCGGA AATCTTAACCTTGATGCCGGTCATTAAACGTATGGGCCTGCCTATCATAGCGCTAACGGGTAATCCAGAATCTACCATGG CTAAACATGCGGTCGTGCATCTGTGTATCGAAGTGCCCGAAGAAGCTTGCCCCTTAGGACTCGCGCCAACATCCAGCACC ACGGCAACCTTAGTCATGGGCGATGCCCTAGCAGTAGCACTATTACAGGCAAGAGGCTTTACCAGAGATGATTTCGCTCT ATCACACCCAGGTGGTATGTTAGGTCGAAAATTACTGCTTAAAGTCAGTGATGTCATGCATAAAGGTTCCGAACTGCCTC TGGTCAGGCATAATATCTGTGTCACAGATGCTCTCTATGAGATATCGAACAAGGGCTTAGGTATGACAGCGGTTACCGAT GATGACAACAAGTTAGTGGGTATTTTTACCGATGGCGATCTTCGCCGAGTCATAGACGCCCAGGTCAACTTAAGAGAAAC ATCTATATCCGATGTGATGAGTAAAGCCTGTACCACCATATCCGAGGGGATTTTGGCCGCCGAAGCACTAAAAGTGATGG ACGAAAAAGATATCAATGGTCTCATCATAGTAGATGATAATAACACCCCCATAGGAGCATTAAATATGCTCGATATGGTG AAGGCAGGAGTAATCTAG Protein sequence : MLDVNKLRQWGKKVIDVERKALDNLYQYVDSAEFAAACKLIFECTGKVIVMGMGKSGHIGNKISATFASTGTPAFFVHPG EASHGDLGVLSEDDIILAISNSGEASEILTLMPVIKRMGLPIIALTGNPESTMAKHAVVHLCIEVPEEACPLGLAPTSST TATLVMGDALAVALLQARGFTRDDFALSHPGGMLGRKLLLKVSDVMHKGSELPLVRHNICVTDALYEISNKGLGMTAVTD DDNKLVGIFTDGDLRRVIDAQVNLRETSISDVMSKACTTISEGILAAEALKVMDEKDINGLIIVDDNNTPIGALNMLDMV KAGVI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| kpsF | AAZ04466.1 | polysialic capsule transport protein | Virulence | PAI I APEC-O1 | Protein | 6e-54 | 42 |
| kpsF | CAE85210.1 | KpsF protein | Virulence | PAI V 536 | Protein | 4e-54 | 42 |
| kpsF | YP_854329.1 | polysialic acid capsule synthesis protein KpsF | Not tested | PAI I APEC-O1 | Protein | 1e-53 | 42 |
