Gene Information

Name : SVI_3907 (SVI_3907)
Accession : YP_003558656.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : OmpR/PhoB family response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 4477509 - 4478249 bp
Length : 741 bp
Strand : +
Note : -

DNA sequence : 
ATGAATGGAACACAGAAGGCATTTGGTGAACACTATAGCCACCACATATTGATCGTGGAAGATGAGCCTGATCTGGCTAA
CTTAATCAAGCTCAATCTAAATACCTTAAGCTATGGTGTGTCCCATAGCACCACATTGAAACATGCCCGAGAAACATTAG
AGATTAAGCAATTCGATCTCATTCTCATCGATCGCATGCTTCCCGACGGAGACGGCATCATGTTGTGCCAACAACTGAGA
GAGTCGGGCCAAACTGTGCCATGCATGATGTTGACGGCAAAAGATTCAGAGGCCGATATCGTACTCGGATTAGAAGCTGG
AGCAGATGACTACTTAGTGAAACCATTCAGCGTATTAGAGCTGAGAGCTAGGGTCAAAGCCTTGCTACGCAGGAGCCATC
TGATTGAAGAACAGCAGGAATCACGGCTGGATTTTTATGGTATTACCATTAACTGCACCACACGAGAAGTGATCGCCTTC
GATACCCACTTGGAGCTAACAGCCAGAGAGTTTGATCTCTTACTATTTATGGCGAAACACCCCAAACAAGTTTTCAGCCG
CATGCAGTTACTCGAGGCCGTGTGGGGCTACTCATACAGCGGATATGAACATACGGTCAATAGCCATATTAACCGTCTAA
GGGCCAAGTTATCCCATTGTGCATCGACCGCAGATCTCGTCAAAACAGTGTGGGGAGTAGGATATAAATTCTCACCACCA
AGCCAAGCCATTAACCATTAA

Protein sequence : 
MNGTQKAFGEHYSHHILIVEDEPDLANLIKLNLNTLSYGVSHSTTLKHARETLEIKQFDLILIDRMLPDGDGIMLCQQLR
ESGQTVPCMMLTAKDSEADIVLGLEAGADDYLVKPFSVLELRARVKALLRRSHLIEEQQESRLDFYGITINCTTREVIAF
DTHLELTAREFDLLLFMAKHPKQVFSRMQLLEAVWGYSYSGYEHTVNSHINRLRAKLSHCASTADLVKTVWGVGYKFSPP
SQAINH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed CAD42044.1 hypothetical protein Not tested PAI II 536 Protein 1e-45 45
c3565 NP_755440.1 response regulator Not tested PAI I CFT073 Protein 4e-45 44

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_002952.2859905.p0 Protein 1e-42 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_009782.5559369.p0 Protein 9e-43 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_002951.3237708.p0 Protein 9e-43 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_007622.3794472.p0 Protein 1e-42 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_002758.1121668.p0 Protein 9e-43 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_009641.5332272.p0 Protein 9e-43 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_013450.8614421.p0 Protein 9e-43 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_007793.3914279.p0 Protein 9e-43 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_003923.1003749.p0 Protein 9e-43 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_002745.1124361.p0 Protein 9e-43 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator CP001918.1.gene5135. Protein 3e-24 43
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_012469.1.7685629. Protein 1e-36 42
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator AM180355.1.gene1830. Protein 6e-34 42
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_005054.2598277.p0 Protein 2e-34 41
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator NC_014475.1.orf0.gen Protein 2e-34 41
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator HE999704.1.gene2815. Protein 1e-36 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator VFG1563 Protein 7e-46 45
SVI_3907 YP_003558656.1 OmpR/PhoB family response regulator VFG1702 Protein 2e-45 44