Gene Information

Name : metB (SVI_3740)
Accession : YP_003558489.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Resistance
Product : cystathionine gamma-synthase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 4242341 - 4243507 bp
Length : 1167 bp
Strand : -
Note : -

DNA sequence : 
ATGACCGAACGTAAGTTAGCCACAATTGCAGTGCGTCAAGGGATTGAATCCGATACCCAACATGGTGCTGTGGTGCCCCC
TATCTATTTATCGACTAATTATTGCTTCGATGGCCATAAGAATCCTAGAGACTTCGATTATAGCCGTTCGGGTAATCCGA
CTCGATCTATTCTTGGGGATGCCATTGCTAGCCTGGAAAAAGGCGCAACTGGCATAGTGACTTGTACAGGTATGGCTGCG
ATTACATTAGTGACTAGCCTGTTGGGTCCCGATGACCTGCTTGTGGTTCCCCATGACTGTTATGGCGGTAGCTATCGTCT
GTTTACTAACTTGGCTAAGAAGGGAGCGTTTAAGTTAGCTGTTGTCGATCAGACCGACAGCGCTGCACTCGAAGTTGCTA
TTGCTCGCAAGCCTAAGATGGTCTGGCTGGAAACACCGTCTAATCCACTACTGCGTGTCGTCGATATCGAAGCTATTTCC
AAGGCAAGTAACTTAGTAGATGCCTTAGTGGTGGTCGATAATACGTTCCTGTCGCCAATTCTACAGCAACCTTTGCTTCT
CGGCGCCGATATCGTTATTCACTCGACCACTAAGTACATCAATGGCCATAGCGACGTAGTCGGTGGTGCCGTCGTCGCTA
AGGATGCCGAGTTAGGTGAGTTATTACATTGGTGGTCGAATACCTTAGGCCTAACTGGGTCAGCCTTCGATAGTTATCTA
ACCTTACGTGGTATTCGTACCCTTGCGGTACGTATTCGTGAGCATCAGGCTAATGCTCAGCGCATATTAGAAGTATTAAC
CACTAGTTTGGCCGTGGAAAAGGTATACTACCCGGGTCTTGAAACACATCCGGGTCATAAGATTGCCGCGAAACAGCAGA
AAGGCTTCGGTGCCATGTTGAGTTTCGAACTCAAGGGTGGAGAGAAGGAGCTGGTGGCATTCTTGGATAAACTCTCTATT
TTTTCACTGGCTGAAAGTTTAGGTGGGGTAGAAAGTTTAGTCGCGGTTCCTGCGACAATGACCCACAGAGCCATGGAGCC
TGAGGCTCGCGCTGCAGCCGGAGTAAAAGAGACCCTTATCCGTCTGTCCGTAGGTATCGAAGATGCCGATGATTTAGTTG
CCGATGTTCAAGCCGGACTCTTTGCAGCATTAGCTGCCAGTCGTTAA

Protein sequence : 
MTERKLATIAVRQGIESDTQHGAVVPPIYLSTNYCFDGHKNPRDFDYSRSGNPTRSILGDAIASLEKGATGIVTCTGMAA
ITLVTSLLGPDDLLVVPHDCYGGSYRLFTNLAKKGAFKLAVVDQTDSAALEVAIARKPKMVWLETPSNPLLRVVDIEAIS
KASNLVDALVVVDNTFLSPILQQPLLLGADIVIHSTTKYINGHSDVVGGAVVAKDAELGELLHWWSNTLGLTGSAFDSYL
TLRGIRTLAVRIREHQANAQRILEVLTTSLAVEKVYYPGLETHPGHKIAAKQQKGFGAMLSFELKGGEKELVAFLDKLSI
FSLAESLGGVESLVAVPATMTHRAMEPEARAAAGVKETLIRLSVGIEDADDLVADVQAGLFAALAASR

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 1e-59 42
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 6e-61 42

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
metB YP_003558489.1 cystathionine gamma-synthase BAC0207 Protein 4e-53 41