|
Name : lysS (SVI_3573) Accession : YP_003558322.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Virulence Product : lysyl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG1190 EC number : - Position : 4043674 - 4045182 bp Length : 1509 bp Strand : - Note : - DNA sequence : ATGACTGAACAAGTACAAGACGAAAACAAGTTAATTGCAGAGCGTCGTGCCAAGCTTGAGCACATACGCGCTAACTGCCC TGCAAATGGTCACCCAAACAACTTCGATCGTAAACACAAAGCGGCAGATATTCAGGCTGAATATGGTCAGTATACCAAGA TAGATCTTGAAGGCATGGCGATCCAACGTAGTATCGCCGGTCGTATCATGGCTAAGCGTGGTCCATTCCTAGTTATCCAG GACGTTAGCGGACGCATCCAGGCTTACGCGGGTAAAGACGTTCAGAAAGATCTTAAAGCCAAGTTTCAGGGCTTAGATAT CGGTGACATTATTGGTGTTACCGGTCAGCTACACCTGTCTGGCAAGGGCGACCTCTATGTGAACATGGAAGATTACCAAT TGCTGACTAAAGCATTGCGTCCACTTCCTGAGAAGTTTCATGGCCTGACGGATCAAGAGACAAGATATCGCCAGCGTTAT GTTGATCTAATCGTCAACGAAGAGTCACGTAATGCTTTCATCATGCGTTCTAAAGTCGTTTCAGCTATCCGTAACTTCAT GATCAAGAAAGAGTTCATGGAAGTTGAAACCCCTATGATGCACACCATCCCAGGTGGTGCTACGGCGCGTCCGTTTATCA CTCACCACAACGCACTGGATATCGAGATGTATCTACGTGTGGCACCTGAGCTTTATCTTAAGCGCTTGGTTGTCGGTGGC TTCGAGCGTGTATTCGAGATCAACCGTAACTTCCGTAACGAAGGTCTATCTCCTCGCCATAACCCAGAATTCACTATGAT GGAATTCTATATGGCCTATGCAGATTATAAAGATCTGATGGACTTGACCGAAGAGATGCTTAGCTCTATTGCTACTGAGC TTTGTGGTTCTCCAAAGCTTCCATACGGCGAGCACACGGTAGATTTTGGCGGCCCATATGCGCGTTTGAGCATGTTGGAT GCCATTAAGAAGTACTGCCCTGACAATGAAACTATTCAGTCTATGACCTATGAAGAGGTTAAAGACGTCGAGTTTATGCG TAACTTGGCTAAGAGCATCGGCATGAAAATCGAGAAGTTCTGGACCTGTGGTCAGCTACTCGAAGAGATCTTCGGTGAAA CTGCCGAGCCTCATTTGATGCAGCCTACCTTCATCACAGGTTATCCTGCAGATATTTCGCCATTGGCACGTCGTAACGAT GAAAACCATTTCATCACCGACCGTTTCGAATTCTTCATCGGTGGCCGTGAAGTCGCTAACGGCTTCTCTGAGCTTAACGA TGCTGAAGATCAAGACCAACGTTTCAAGGCTCAGGTTGCCGCGAAAGATGCTGGTGATGACGAAGCCATGTTCTATGATG CAGATTATATCAGAGCCCTCGAGCACGGCTTGCCACCTACTGCCGGTCAAGGCATCGGCATAGATCGTTTGGTGATGTTG TTTACCAACACGCATACGATTCGTGACGTGATCTTGTTCCCAGCCATGCGCCCTCAAGCTCAAGGCTAA Protein sequence : MTEQVQDENKLIAERRAKLEHIRANCPANGHPNNFDRKHKAADIQAEYGQYTKIDLEGMAIQRSIAGRIMAKRGPFLVIQ DVSGRIQAYAGKDVQKDLKAKFQGLDIGDIIGVTGQLHLSGKGDLYVNMEDYQLLTKALRPLPEKFHGLTDQETRYRQRY VDLIVNEESRNAFIMRSKVVSAIRNFMIKKEFMEVETPMMHTIPGGATARPFITHHNALDIEMYLRVAPELYLKRLVVGG FERVFEINRNFRNEGLSPRHNPEFTMMEFYMAYADYKDLMDLTEEMLSSIATELCGSPKLPYGEHTVDFGGPYARLSMLD AIKKYCPDNETIQSMTYEEVKDVEFMRNLAKSIGMKIEKFWTCGQLLEEIFGETAEPHLMQPTFITGYPADISPLARRND ENHFITDRFEFFIGGREVANGFSELNDAEDQDQRFKAQVAAKDAGDDEAMFYDADYIRALEHGLPPTAGQGIGIDRLVML FTNTHTIRDVILFPAMRPQAQG |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| unnamed | CAD66193.1 | putative lysil-tRNA synthetase LysU | Not tested | PAI III 536 | Protein | 6e-136 | 56 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| lysS | YP_003558322.1 | lysyl-tRNA synthetase | VFG1668 | Protein | 3e-136 | 56 |
