Gene Information

Name : SVI_3028 (SVI_3028)
Accession : YP_003557777.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : iron (chelated) ABC transporter permease
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3434569 - 3435486 bp
Length : 918 bp
Strand : +
Note : -

DNA sequence : 
ATGATCAGCTTGTTTAACTCAGGTCTAGAGACATTACTCTTACCCTTTAGCTTTACCTTCATGCATCAGGCCTTCATGAT
CGTCCTGTTAGTGGCGATTCCCACCTCTGTGCTCTCCTGCTTTTTAGTGCTCAAGGGCTGGTCCCTAATGGGAGACGCCA
TTTCCCATTCTGTGTTGCCCGGGGTGATTTTGGCGTATGTGCTATCCATTCCCTATGCCATAGGCGCATTCGCCGCTGGC
ATGTTCTGCGCCTTAGCCACGGGATTTATCAAGGACAATAGTCGTCTCAAGGAAGACACTGTGATGGGAGTGGTATTTTC
CAGCATGTTTGGTTTAGGCTTAGTGCTGATGACTAAAGTTGAGACTGGGGTCCATCTGGACCATATCTTGTTCGGTGATG
TGCTTGGAGTGAGCTGGACCGATGTACTCGAAGCTGGGGGAATTGCCCTGCTGGTGATAAGCTTCATCCTCTTCAAGGGA
CGGGATCTGCTGGTGTTTGTCTTCGACCACCAACATGCCAAAGCCATAGGACTGCCCGTAAATCTGCTACATTATGGTCT
GCTGTCGATACTCTCTCTCACCATAGTAGGCGCGCTTAAGGCCGTAGGCATGATTCTGGTGGTCGCCATGCTGATTGCCC
CCGGGGCCATCGCCTTTCTGTTGACACGTAAGTTTCAATCTATGATGCTCATCGCCCTATTTATTTCGACCCTGACCTCC
TTCTTGGGTGTCTACCTCAGCTTCTTCATCGATAGCGCACCGGCGCCCACCATCATAATGCTGATGACGCTGATTTTCAT
CTGTGTGTTCTTTTATTCAGGCTATCAGACGAGGCGAACCTCCTCGCTCCTAGGCTCAGAAAATCAACAAGCAAAACAGC
AAGGTTTAGCGCCGACCAAGGAGGCTTGCGCCGAATGA

Protein sequence : 
MISLFNSGLETLLLPFSFTFMHQAFMIVLLVAIPTSVLSCFLVLKGWSLMGDAISHSVLPGVILAYVLSIPYAIGAFAAG
MFCALATGFIKDNSRLKEDTVMGVVFSSMFGLGLVLMTKVETGVHLDHILFGDVLGVSWTDVLEAGGIALLVISFILFKG
RDLLVFVFDHQHAKAIGLPVNLLHYGLLSILSLTIVGALKAVGMILVVAMLIAPGAIAFLLTRKFQSMMLIALFISTLTS
FLGVYLSFFIDSAPAPTIIMLMTLIFICVFFYSGYQTRRTSSLLGSENQQAKQQGLAPTKEACAE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitD NP_457258.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 3e-67 57
sitD NP_806467.1 iron transporter inner membrane protein Virulence SPI-1 Protein 3e-67 57
sitD AAD41068.1 SitD Virulence centisome 63 pathogenicity island Protein 5e-67 57
sitD NP_461785.1 permease Virulence SPI-1 Protein 7e-67 57
sitD YP_217784.1 iron transporter: fur regulated Virulence SPI-1 Protein 4e-67 57

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_3028 YP_003557777.1 iron (chelated) ABC transporter permease BAC0352 Protein 3e-67 57
SVI_3028 YP_003557777.1 iron (chelated) ABC transporter permease BAC0442 Protein 6e-62 48
SVI_3028 YP_003557777.1 iron (chelated) ABC transporter permease BAC0441 Protein 1e-43 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_3028 YP_003557777.1 iron (chelated) ABC transporter permease VFG0528 Protein 3e-67 57