Gene Information

Name : SVI_3027 (SVI_3027)
Accession : YP_003557776.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : iron-compound ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1108
EC number : -
Position : 3433632 - 3434585 bp
Length : 954 bp
Strand : +
Note : -

DNA sequence : 
ATGATTGAAACTCTATTACAGCCATTCGAATATGGCTACATGGTAAATGCCATCTTTATCAGCGCTCTGGTTGGCGGCGT
TTGTGCCTTCCTATCCGCCTACCTGATGCTCAAGGGTTGGTCCCTTATCGGCGATGCCCTGTCACACTCAATCGTTCCCG
GTGTCGCCGGCGCCTATATGTTAGGCCTGCCCTTCGCCCTCGGCGCCTTCTTCTCTGGGGGACTCGCGGCAACGACCATG
CTGTTTCTCAGTCAGAGATCTAAACTTAAAGAGGATGCCATCATAGGCTTGATCTTCACCTCCTTCTTCGGCCTCGGCCT
GTTTATGGTGTCACTCTCGCCTACTTCGGTGAACATTCAGACCATAGTACTGGGAAATATCTTGGCCATTACCCCGGAAG
ATACCCTACAACTCCTGCTAATTTCTGGCATATCTTTGATCGTGCTGGTACTGAAATGGCGAGATCTTATGGTGGTCTTC
TTCGATGAGAACCATGCCAGAAGCATAGGTCTTAATCCCAATCGCCTAAAGATCCTCTTCTTCACCTTGCTGAGTGCATC
GACTGTGGCGGCGTTGCAAACCGTAGGCGCGTTTCTGGTGATAGCCATGGTCGTGACTCCGGGAGCTACTGCTTATCAGC
TCAGCGACCGATTTGGCACCCTAGTCATCTTGAGTGTCGCCATAGGTGCCATTACCTCGTTTGTCGGCGCCTACCTAAGC
TTCTTTATCGATGGTGCTACCGGCGGCATCATAGTGGTATTACAAGCTTGCGTCTTCGTGCTGACATTTGTATTCGCGCC
TAAACATGGCTACTTGGCGGCGAGACGCAGGGCAAAACATTTCTCAGACCCAAGCGTAAACACCATCTCTAAAAACATGT
CGCAAACCACACTAGGACAAGTGTCAAAAAACGTCTCAGTGGATACAGGAGTCCCCAATGATCAGCTTGTTTAA

Protein sequence : 
MIETLLQPFEYGYMVNAIFISALVGGVCAFLSAYLMLKGWSLIGDALSHSIVPGVAGAYMLGLPFALGAFFSGGLAATTM
LFLSQRSKLKEDAIIGLIFTSFFGLGLFMVSLSPTSVNIQTIVLGNILAITPEDTLQLLLISGISLIVLVLKWRDLMVVF
FDENHARSIGLNPNRLKILFFTLLSASTVAALQTVGAFLVIAMVVTPGATAYQLSDRFGTLVILSVAIGAITSFVGAYLS
FFIDGATGGIIVVLQACVFVLTFVFAPKHGYLAARRRAKHFSDPSVNTISKNMSQTTLGQVSKNVSVDTGVPNDQLV

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitC NP_461784.1 permease Virulence SPI-1 Protein 1e-84 73
sitC AAD41067.1 SitC Virulence centisome 63 pathogenicity island Protein 8e-85 73
sitC NP_457257.1 Iron transport protein, inner membrane component Virulence SPI-1 Protein 1e-84 73
sitC NP_806466.1 iron transporter inner membrane protein Virulence SPI-1 Protein 1e-84 73
sitC YP_217783.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-84 73

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_3027 YP_003557776.1 iron-compound ABC transporter ATP-binding protein BAC0351 Protein 5e-85 73
SVI_3027 YP_003557776.1 iron-compound ABC transporter ATP-binding protein BAC0441 Protein 6e-72 69

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_3027 YP_003557776.1 iron-compound ABC transporter ATP-binding protein VFG0527 Protein 4e-85 73