Gene Information

Name : SVI_3026 (SVI_3026)
Accession : YP_003557775.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : iron-compound ABC transporter ATP-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3432691 - 3433554 bp
Length : 864 bp
Strand : +
Note : -

DNA sequence : 
ATGACAACACTCAATAGCGGACTTATCGTTAACGACATCACGGTCACATACCGCAACGGCCATACGGCGATTTATGACGC
CAGCTTTGACCTGCCCAAGGGCTCAATCACGGCGCTGGTTGGCATCAACGGCAGCGGTAAGTCCACCCTATTTAAATCCA
TCATGGGCTTCGTCACCTTAGCTAAGGGCAAGGTCGAAATCTTGGGTCTGTCGGTTAAACAAGCCCTAAAAAGCAATGTG
GTGGCCTATGTACCTCAGAGCGAAGAGATAGACTGGAATTTTCCCGTCTTGGTGGAAGATGTGGTCATGATGGGTCGATA
TGGCCATATGAACATGTTTCGCATCGCCAACAAGCATGATGAAGAGATGGTGAATATCGCTCTGGACAGGGTAAATATGA
GAGCATTTCGCAAGCGTCAGATAGGTGAGCTATCCGGCGGACAAAAAAAACGTATCTTTCTCGCCAGGGCCCTAGCGCAA
GAAGGCCAAGTCATCTTACTCGATGAGCCTTTCACTGGCGTGGATGTGAAGACCGAAGATCAGATCATGGACTTGCTGCG
TGAGTTACGCGCCGAGGGCAAGGTTATCTTGGTATCTACCCATAACTTAGGTAGCGTGCCCGAGTTTTGTGACAGATGCG
TACTCATCAACCGCACTGTACTCGCCGCCGGCCCCACTAAATTGGTATTCACTCAGGAAAATCTGCAACTGGCATTTGGC
GGCGTGCTGCGCCACTTCGTCTTGAGCGGTAAAAACCTCCATGAAGATGATGACGCCAGGCAACTGACCTTGCTAACGGA
TCATGAGCGACCTGTGGTGTTATACGGTGATGACAACAAGGCTCAAGTTGTCAGCAGTGAATAA

Protein sequence : 
MTTLNSGLIVNDITVTYRNGHTAIYDASFDLPKGSITALVGINGSGKSTLFKSIMGFVTLAKGKVEILGLSVKQALKSNV
VAYVPQSEEIDWNFPVLVEDVVMMGRYGHMNMFRIANKHDEEMVNIALDRVNMRAFRKRQIGELSGGQKKRIFLARALAQ
EGQVILLDEPFTGVDVKTEDQIMDLLRELRAEGKVILVSTHNLGSVPEFCDRCVLINRTVLAAGPTKLVFTQENLQLAFG
GVLRHFVLSGKNLHEDDDARQLTLLTDHERPVVLYGDDNKAQVVSSE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 2e-85 67
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 2e-85 67
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-83 66
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 6e-84 66
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 5e-84 66

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_3026 YP_003557775.1 iron-compound ABC transporter ATP-binding protein BAC0350 Protein 3e-84 66
SVI_3026 YP_003557775.1 iron-compound ABC transporter ATP-binding protein BAC0440 Protein 8e-93 64
SVI_3026 YP_003557775.1 iron-compound ABC transporter ATP-binding protein BAC0400 Protein 5e-45 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_3026 YP_003557775.1 iron-compound ABC transporter ATP-binding protein VFG0526 Protein 3e-84 66