Gene Information

Name : SVI_3025 (SVI_3025)
Accession : YP_003557774.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : Iron transport protein, periplasmic-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 3431693 - 3432586 bp
Length : 894 bp
Strand : +
Note : -

DNA sequence : 
ATGCTTCGTACATTTGGTTTGCTGCTCACTATCACACTCTCCTTCTGGTCTCACGAGCTGCTTGCCAGCCAGGGTGATAA
GTTTAAGGTCATCACTACCTTCACCGTCATCGCCGATATGGCTAGAAACGTGGCGGGAGATGCCGCTATTGTCGAGTCAA
TCACCAAACCAAATGCCGAAATTCATAACTATCAAGCGACACCTGGAGACATTCGTCGGGCCCAGGGAGCCGATTTAATC
CTGTATAACGGTCTCAACTTGGAACTCTGGTTCAATAAGTTTTTTCAAAACCTCAATGAGGTCCCCCGTACCATAGTCAC
CCAAGGGATAGAACCTATGGGGATTTCTCAGGGACCCTATTCAGGTAAGCCTAATCCCCATGCCTGGATGTCAGCCCCCA
ATGCCCTGATCTATGTGGAAAACATCCGTAAGGCCTTAGTCCGCTATGACAGCGACAATGCCGCAATTTATAACACCAAT
GCCAAACGTTATTCGGCGCAGATCCTCGCCGCCGTCGAGCCATTCAAGGCACAATTAGATGCGGTATCTAAGGAAAGACG
ATGGCTGGTGACCAGCGAGGGGGCCTTTAGCTACCTGACTCGAGACTATGATCTGCAAGAACTCTACCTTTGGCCCATCA
ATGCCGATGCTCAGGGCACACCGCAACAGGTAAGAAAGGTTATCGACCAGATGAGACAGCATAAGATACCCGTCATTTTC
AGTGAGAGCACAGTATCGGCCAAACCCGCACAGCAGGTGGCACGAGAAACTGGAGCCAAATACGGAGGCATGCTTTATGT
GGACTCTTTGAGCAGCAGTTCAGGCCCAGTACCGACCTACATCAGCCTACTGACAAGCACTTTGGACACTATAGCCAAAG
GACTAAAAGACTAA

Protein sequence : 
MLRTFGLLLTITLSFWSHELLASQGDKFKVITTFTVIADMARNVAGDAAIVESITKPNAEIHNYQATPGDIRRAQGADLI
LYNGLNLELWFNKFFQNLNEVPRTIVTQGIEPMGISQGPYSGKPNPHAWMSAPNALIYVENIRKALVRYDSDNAAIYNTN
AKRYSAQILAAVEPFKAQLDAVSKERRWLVTSEGAFSYLTRDYDLQELYLWPINADAQGTPQQVRKVIDQMRQHKIPVIF
SESTVSAKPAQQVARETGAKYGGMLYVDSLSSSSGPVPTYISLLTSTLDTIAKGLKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 1e-95 70
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 1e-95 70
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 2e-95 70
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 1e-95 70
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 1e-95 70

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_3025 YP_003557774.1 Iron transport protein, periplasmic-binding protein BAC0349 Protein 7e-96 70
SVI_3025 YP_003557774.1 Iron transport protein, periplasmic-binding protein BAC0439 Protein 2e-87 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_3025 YP_003557774.1 Iron transport protein, periplasmic-binding protein VFG0525 Protein 6e-96 70