Gene Information

Name : mdeA (SVI_2979)
Accession : YP_003557728.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Resistance
Product : methionine gamma-lyase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0626
EC number : -
Position : 3375381 - 3376559 bp
Length : 1179 bp
Strand : -
Note : -

DNA sequence : 
ATGCAAGAAAAGTGGAAACTGGCAACGCAAGTTATACATGCTGGGCATATTAAAGACAGTTCAGGGGCACTGGTAACCCC
CTTGTGCCAGAGTGCAACTTTCGTATTCGATAGTGCACAGCAGGGAGGTGCTAGGTTTGCTGGCGATGAGCCAGGTTATA
TCTATACTCGACTCGGTAACCCAACCACGGCTGAGTTAGAGCGCAAGATGGCTCGGCTTGAAGGGGCTGAAGCGGCTGCT
GCTACGGCATCAGGTATGGCGGCGGTTTCTTCAGCGCTGCTGGCTAATCTTTCACAAGGCGATCATCTGGTTGCTTCCAA
GGCCGTATATGGCTGTACTTTCTCACTGATGAGCACACAGTTGAGCAAGTTTGGTATTGAGGTGTCCTTGGTTGATTTTA
AGGATCTCGATGCGATTTCTGCAGCGATAACCAACAAGACCAAAGTACTTTTCTGTGAGACACCAGTTAATCCTCATCTC
GATGTTTTTGATTTAGATGCACTGGTGTCAATTGCACGCAAGCATGGTTTGATCAGCATCATAGACAATACGTTCATGAC
CCCATTGTTGCAGCAACCTTTGGCTCACGGAGTCGATCTTGTTGTTCACAGTGCCACTAAGTACCTCAATGGACACGGCG
ATGTCATTGCCGGAATAATCTGTGGCAGTAATGAGCAGATAGAGAAGATAAAATTCGAAACCATGAAAGACTTAGGCGGA
GTCTTGTCTCCCCATGATGCCTGGTTGATTCTGCGAGGACTAAAAACCTTAGATGTCAGAATGGAACGTCATTGTGATAA
CGCCCAGAGAGTGGTGGAATACCTGTTATCTCATCCTAAAGTGGTTAAGGTGTATTACCCTGGAATCGAGGGAAGCTATG
GTCAGCACCTACTCGGTAAGCAGATGCGCAGGGGCGGTGGAGTGATCGCTTTTGAGCTTGATGCAGACTTAGATAAGTCC
ATCGAGTTTATCAATAGCCTGCAACTATTTTCCATCGCAGTGAGTCTAGGAGATGCCGAGTCTTTAATACAACATCCAGC
TTCAATGACTCATGCTACCTATGATAAAGAGGAGCGGGAAGCTGCGGGTATTGGTGAGAATCTGTTGCGTATCTCTGTGG
GGCTAGAATCAGTCGAAGACCTTATTGTCGACTTAGATCAAGGCTTGGCTCAGATTTAG

Protein sequence : 
MQEKWKLATQVIHAGHIKDSSGALVTPLCQSATFVFDSAQQGGARFAGDEPGYIYTRLGNPTTAELERKMARLEGAEAAA
ATASGMAAVSSALLANLSQGDHLVASKAVYGCTFSLMSTQLSKFGIEVSLVDFKDLDAISAAITNKTKVLFCETPVNPHL
DVFDLDALVSIARKHGLISIIDNTFMTPLLQQPLAHGVDLVVHSATKYLNGHGDVIAGIICGSNEQIEKIKFETMKDLGG
VLSPHDAWLILRGLKTLDVRMERHCDNAQRVVEYLLSHPKVVKVYYPGIEGSYGQHLLGKQMRRGGGVIAFELDADLDKS
IEFINSLQLFSIAVSLGDAESLIQHPASMTHATYDKEEREAAGIGENLLRISVGLESVEDLIVDLDQGLAQI

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SAR0460 YP_039909.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 4e-58 41
SAS0418 YP_042545.1 Cys/Met metabolism PLP-dependent enzyme Not tested vSa¥á Protein 3e-59 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
mdeA YP_003557728.1 methionine gamma-lyase BAC0207 Protein 1e-83 50