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Name : mshE (SVI_0289) Accession : YP_003555038.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Virulence Product : MSHA biogenesis protein MshE Function : - COG functional category : N : Cell motility COG ID : COG2804 EC number : - Position : 348588 - 350333 bp Length : 1746 bp Strand : + Note : - DNA sequence : GTGAAACCCAAGTTAAAGATGCGTCTAGGTGATCTCCTGGTTCAGGAACAGATCATAGGTGAGGCTCAACTGCTGGAAGC GTTAGCAGAGCAGAGAAGTAGTGGCAAAAAATTGGGCCGCACGCTGATCGATCTTAATTGTATTACCGAAGAGCAACTAC TACGCTTCCTCTCTCAGCAGCTAAATATTCCTTTTCTCGATATCAGTAAGCGCCCTATTCCCAGCAAAGTGGTTAACTTG TTGCCCGAGGTTCAAGCGAGACGCTTCCGAGCGCTGGTTGTGGAAGATAATGGTGATAGCGTCTTGGTTGTCATGAGTGA TCCTGCCGACTTACAGGCCATGGATAACCTCGAAGTGCAGTTACTGCCTAAGCTATTGAAGATAGCTGTGGTGACCGAGA GTCAGCTGCTGGATGCCTTCGATAATCTCTATAGGCGAACCGATGAGATCGCTCAGATCGCGGGTAAGCTCGAAGAGGAA TATGCCGCCGATGATCAATTCGATCTTGCCAGTCTCACCCAAGGTGATAGCGATAATGAAACCACAGTCGTAAAGCTACT CCAGTCTATTTTTGAAGATGCGGTGCAGATGCGAGCTTCGGATATTCATATCGAACCGGGTGAGAAGGTACTGCGCATCA GGCAACGTATCGATGGTCAGTTACATGAGAATTTACTGCCAGAAGTGAGTATTGCCGCCGCTTTGGTTTTGAGGCTAAAA CTGATGGCTGGCCTGGATATCTCTGAGAAGCGTCTGCCCCAGGATGGACGATTTCATATGGAGATTAAAGGGCATAAGAT CGACGTGCGTATGTCGACCATGCCTATTTATCATGGTGAATCTGTGGTGATGCGTCTGCTGGATCAGTCAGCTGGCTTAC TGACTCTGAATGAAACCGGTATGCCGCCGGAGATCTTAGCGCGAATTCGAAAACAGATTAAGCGTCCCCATGGCATGCTA TTGGTGACAGGGCCAACAGGTAGCGGTAAAACCACGACCCTGTACGGCATATTGAGTGAACTCAATACCGCGGACAGAAA GATAATCACGGTTGAAGACCCGGTGGAATACCAGTTACCGCGTATCAACCAAGTTCAGGTCAATCATAAAATTGGCTTAG ATTTCTCCCATGTACTGCGAACTACACTACGTCAAGATCCCGATATCATCATGGTGGGTGAGATGCGAGATCGAGAGACG GTTGAGATTGGCCTTCGAGGTGCTTTAACTGGTCACTTCGTATTGTCGACCTTACACACAAATGATGCGGTTACCAGTGC ATTACGTCTGCTTGATATGGGCGCGGCAAGTTACCTAGTAGCGAGTGCCTTAAGGGTCATTATTGCTCAGCGGCTGGTGA GACGAGTGTGCCAGAGTTGCTCCGGTGATTATCAGTTAACGGCGCAAGACAGTGCCTGGTTAAACTCGGTTAGTCATCTG GATTTCTCGCAGGCGACATTTAAAATTGGTTCAGGTTGCCAGAGCTGTAATGGCAGTGGCTATCGTGGGCGTATCGGTGT GTTCGAGATCCTTGAACTAGATGAGTCTATGGTAGAAGCCATGCGGACAGGTAATCCACAAGATTTTGCTCTCGCAGCAA AAAATAGCCCTAATTTTACTCCGTTAGCAGAATCTGCACTTAAATATCTGGGTGAGGGCATGACGACTATCGAAGAGGTG GCCAAGCTAGTCGAAGATGTGACCGAATCTCACATTCCCCTATCGGCAGATATGGTGACTCAGTAA Protein sequence : MKPKLKMRLGDLLVQEQIIGEAQLLEALAEQRSSGKKLGRTLIDLNCITEEQLLRFLSQQLNIPFLDISKRPIPSKVVNL LPEVQARRFRALVVEDNGDSVLVVMSDPADLQAMDNLEVQLLPKLLKIAVVTESQLLDAFDNLYRRTDEIAQIAGKLEEE YAADDQFDLASLTQGDSDNETTVVKLLQSIFEDAVQMRASDIHIEPGEKVLRIRQRIDGQLHENLLPEVSIAAALVLRLK LMAGLDISEKRLPQDGRFHMEIKGHKIDVRMSTMPIYHGESVVMRLLDQSAGLLTLNETGMPPEILARIRKQIKRPHGML LVTGPTGSGKTTTLYGILSELNTADRKIITVEDPVEYQLPRINQVQVNHKIGLDFSHVLRTTLRQDPDIIMVGEMRDRET VEIGLRGALTGHFVLSTLHTNDAVTSALRLLDMGAASYLVASALRVIIAQRLVRRVCQSCSGDYQLTAQDSAWLNSVSHL DFSQATFKIGSGCQSCNGSGYRGRIGVFEILELDESMVEAMRTGNPQDFALAAKNSPNFTPLAESALKYLGEGMTTIEEV AKLVEDVTESHIPLSADMVTQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| gspE | YP_854406.1 | type II secretion protein GspE | Not tested | PAI I APEC-O1 | Protein | 2e-76 | 43 |
| gspE | CAE85233.1 | GspE, hypothetical type II secretion protein | Not tested | PAI V 536 | Protein | 1e-76 | 43 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| mshE | YP_003555038.1 | MSHA biogenesis protein MshE | VFG1876 | Protein | 2e-83 | 44 |
| mshE | YP_003555038.1 | MSHA biogenesis protein MshE | VFG1880 | Protein | 4e-75 | 42 |
| mshE | YP_003555038.1 | MSHA biogenesis protein MshE | VFG2048 | Protein | 3e-76 | 42 |
