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Name : topB (SVI_2870) Accession : YP_003557619.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Unknown Product : DNA topoisomerase III Function : - COG functional category : L : Replication, recombination and repair COG ID : COG0550 EC number : - Position : 3244307 - 3246256 bp Length : 1950 bp Strand : - Note : - DNA sequence : ATGATTCTTTATATCGCAGAAAAACCTTCCCTTGGTCGAGCCATAGCTGATGTGCTACCTAAGCCCCATAAAAAGGGTGA CGGTCATATCATGGCGGCTAATGGTGATTGTGTTTCCTGGTGTATCGGTCATCTGTTGGAGCAGGCAGAGCCCGATAGCT ACGATGCGGCATATAAGTCGTGGAAGTTTGAGCATCTGCCCATTATCCCTGAAAAGTGGAAGATGAAGGCTAAACCTAAG ACCCGTAGTCAATTAACCGTACTTAGGGGCTTAGTCAAAAAAGCCACTCAACTGGTTAATGCTGGCGATCCCGACAGGGA GGGGCAGCTATTAGTCGATGAAGTGATCTCTCATTTGGGCGTCAAGGGCGAAAAACTCAATAATACACAGCGCCTGCTGA TCAGCGATCTCAATCCTCAGGCGGTGAAACGTGCATTGGGGCAGATGCGCAGTAATCGAGAATTCATTCCCCTGTCTACT TCTGCCTTAGCCCGTTCTCGTGCCGATTGGCTCTATGGTCTGAATATGACCAGAGCCTATACCCTGCAAGGTCGTAAGGT GGGATATCAGGGCGTGTTATCTGTAGGGCGAGTACAGACTCCCTTGTTAGGCTTAGTGGTTCGCCGGGATGAAGAGATAG CTAACTTTGTTTCTAAGTCTTTCTATGAGGTTCAGGCCAATCTCAATACAGAGAAAAATGAGGCGTTCAGAGCCAAGTGG CAGCCCAGTGAAGCCTGCCAACCTTATATGGATGAAGAAGGCAGAGTCTTATCTAAAGGTCTGGCACAAAATGTCGTGGA TCGCATTAGTGATAAACCGGCACAGGTTACTCAGGTTATTGCTAAAGATAAGCAGCAAAATGCGCCTCTCCCTTATAGCC TGTCTTCGCTGCAGATAGATGCAGCCAAGCGATATGGTATGAGCGCCAAAGAGGTGCTCGACACCTGTCAGACGCTTTAT GAGCGACATAAGTTGATCACTTATCCCAGATCTGACAGTCGTTACCTGCCAGCGGAACAGTTTTCCCAAGCCCCTCAAGT CATAGGTGCGGTGCTATCAGGGGCTGGCGAGTTAGTCGAGAACAGCGATAAACCAGATCCTAAGATAAAATCTAAGGCCT GGAACGACAGCAAGGTCGATGCTCACCATGCCATCATACCCACAGAAAAACGAGTCAATCTCTCCAGTCTGAGTGCTTGG GAGAGGCAAATCTACCTGCAAGTGGCTCGTCAATATCTTGCCCAGTTCTATCCGCCTTATCTCTATAGCGAAACTGAGGT TCATGTGTTGATCGAGGGCGGTCACTTCAAGACTAAGGCGAAGCAGGAAAGGGCGCAGGGGTGGAAGCAGCTATTTACGC GAAATAATACTGCTAATACAAATAGCGCGAGCACTGGCAAGGAAGACGATGATGAGTCACAGCAGAAATTGCCAGCGCTG AAGAAGGGTCAGTCTTTGCATTCTGGTGCTGGCGAGTTAATCGAGAAACAGACCCAGCCAGCTAAACATTTTACCGATGC CACTCTACTTGGTGCTATGACTGGAATTAATCGTTATGTGACGGATCCTGAGATCCGAAAAATATTGAAAGATACCGATG GGCTGGGCACCGAAGCGACTCGAGCTGGGATCATAGAATTGCTGTTTAAGCGCACCTTCCTCAGTAGACAGGGCAAAACT ATTATAGCCACCGAGGTAGGTAGGGGGCTGATTAACAGCCTGCCTTTGAGTGCCACTACGCCTGATATGACCGCATTGTG GGAAAGTAATCTCGATGCCATCAGTCGCAAAGAAGCTAAGTATCAAAGTTTTATGACCCCACTCATCGACTCTCTGAGCC ACTTGATAACTCAGGCTGGTTCACAGCTACCGACAGCTTTACAAGGCGTAAAGGCGCCGAAAAGTAGCTTTAAGAAGCGA CGTTTCACTAAGAAAAAATCCAAGAGCTGA Protein sequence : MILYIAEKPSLGRAIADVLPKPHKKGDGHIMAANGDCVSWCIGHLLEQAEPDSYDAAYKSWKFEHLPIIPEKWKMKAKPK TRSQLTVLRGLVKKATQLVNAGDPDREGQLLVDEVISHLGVKGEKLNNTQRLLISDLNPQAVKRALGQMRSNREFIPLST SALARSRADWLYGLNMTRAYTLQGRKVGYQGVLSVGRVQTPLLGLVVRRDEEIANFVSKSFYEVQANLNTEKNEAFRAKW QPSEACQPYMDEEGRVLSKGLAQNVVDRISDKPAQVTQVIAKDKQQNAPLPYSLSSLQIDAAKRYGMSAKEVLDTCQTLY ERHKLITYPRSDSRYLPAEQFSQAPQVIGAVLSGAGELVENSDKPDPKIKSKAWNDSKVDAHHAIIPTEKRVNLSSLSAW ERQIYLQVARQYLAQFYPPYLYSETEVHVLIEGGHFKTKAKQERAQGWKQLFTRNNTANTNSASTGKEDDDESQQKLPAL KKGQSLHSGAGELIEKQTQPAKHFTDATLLGAMTGINRYVTDPEIRKILKDTDGLGTEATRAGIIELLFKRTFLSRQGKT IIATEVGRGLINSLPLSATTPDMTALWESNLDAISRKEAKYQSFMTPLIDSLSHLITQAGSQLPTALQGVKAPKSSFKKR RFTKKKSKS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| topB1 | YP_005176228.1 | DNA topoisomerase III | Not tested | ICEPmu1 | Protein | 3e-107 | 41 |
