Gene Information

Name : SVI_2263 (SVI_2263)
Accession : YP_003557012.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : LuxR family transcriptional regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG2197
EC number : -
Position : 2590647 - 2591291 bp
Length : 645 bp
Strand : -
Note : -

DNA sequence : 
ATGACGTTTGGCCAGTACAAGTCGATAAGCATATTAGTGGTTGATGACCATTCGTTAATATTTGATGGATTACGTAGTTG
CCTGGCACCCTATTCTGAGCTTGAATTGGTGGGGTTTGTTGAAGATGGTTTAGCGGTATATGAGCAATGCTTAAAATTAA
AGCCAGATCTCGTGTTTATGGATCTAAAACTGCCTGGTATGAGTGGTTTCGATGTGATCCGTCAGTTACGCCAACGTTGG
CCAGAGATGATGATAATCATGCTGACGGCGACTGTAGAAGAGAAGAGTGCCCGTGAAGCATTAGATGTAGGTGCTAATGG
CTACGTACTCAAAAATAGCCCGAAAAGTACCTTGTTAGCCGCCATTAAATCAGTTTGCAAAGGTAAGACTTTTATTGATT
CTAGCTTAGACGAACAACAAGTTGAGGCGCTGATTGGTGCCGTTGATGGCGATATGCCTATGCTGACGCCAAGAGAGCAG
CAAGTGCTAAAGTTGATCTGTGAGGGACGTCGTAACCGGGATATTGCGGAGGACTTGGTAATAGGTTTGAAAACGGTTGA
AACCCATAGGATGAATTTAATGCGTAAACTCAACGCACATAACGTAGCAGAGCTAATTCATTGGGCTCAAAGGCTAGCTG
GTTAA

Protein sequence : 
MTFGQYKSISILVVDDHSLIFDGLRSCLAPYSELELVGFVEDGLAVYEQCLKLKPDLVFMDLKLPGMSGFDVIRQLRQRW
PEMMIIMLTATVEEKSAREALDVGANGYVLKNSPKSTLLAAIKSVCKGKTFIDSSLDEQQVEALIGAVDGDMPMLTPREQ
QVLKLICEGRRNRDIAEDLVIGLKTVETHRMNLMRKLNAHNVAELIHWAQRLAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0255 YP_002345335.1 two-component response regulator Not tested Not named Protein 7e-47 52
ssrB CAB09344.1 SsrB Virulence SPI-2 Protein 2e-35 48
ssrB NP_460356.1 transcriptional activator Virulence SPI-2 Protein 1e-39 47
ssrB YP_216399.1 secretion system transcriptonal activator Virulence SPI-2 Protein 2e-39 47
ssrB NP_456137.1 putative two-component response regulator Virulence SPI-2 Protein 1e-39 47
ssrB NP_805062.1 two-component response regulator Virulence SPI-2 Protein 1e-39 47

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_2263 YP_003557012.1 LuxR family transcriptional regulator VFG0492 Protein 3e-40 47