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Name : SVI_2260 (SVI_2260) Accession : YP_003557009.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Virulence Product : type III secretion system EscC protein Function : - COG functional category : N : Cell motility COG ID : COG1450 EC number : - Position : 2585734 - 2587209 bp Length : 1476 bp Strand : - Note : - DNA sequence : ATGAAGCAACTGTTTTTGTTACTGCTACTGCTCAATCTCAACTTTGCATATGCAACGCCGCTAGCGTCTATAAAGTGGCA AGGTGAGCCTTTTGTGATGCTGAGTCGTGGTACTGCTTTGTCATCAGTATTACAGGACTTTGCCAATAACTATGGAGTCC CAATTTCAGTCAGTAACAAGATCACCGATACCTTTATTGGTCAAATTCAGCATCAAGAACCAAAACAAATTATCAAAGAA TTAAGTCGCCGATATAGCTTGGTTTGGTATTACAGCAATGAAGTCTTGTTCGTCTATAAAGTGAGTGAGGTTACGAATGA AATCCTCTCTTTAACGAGTCTGTCAGCAGTTAGAGCCAGTCAGTATATTAAAGCGGCCGGTATGCTTGAGGCTGGGGTTT GTAAAACAAAGCCGATGACGGGGATTAGTGGTCTACAAGTTTCTGGTGTACCTGCGTGTATTAAGAATGTCACTAAGTTT ACAAAGCAACTCGATGCTAATGCCAAACAAGTCGCCGAGACAAAAGAGATTGTACGGGTTTACCCTCTAAAATATGCATC GGCTACCGACTCTGTATACCAATACCGCGAACAGTCTGTAAAAATTCCTGGATTAGTGAATGTACTTAAAGAGATGGAGC TAGGTAATCAGGTTGCCAATGCTGTTTCGGGTACTGTGAGCAATGTCAGTGGCCCTGTCTTTGCTGCTGATTCTCGTCGA AATGCCATTATTGTACGGGGAAGCAGCCAAGATGTTACGACCTATGCATCATTAATAAAGCAGTTAGATAACAAGCCAAC GATGATTGAAATTTCGGTTTCAATCCTAGATATCGATGCATCAGATTTTAAACAACTAGGTGTCGATTGGTCGGCTTCGG CTCAATTAGGCAATGGCTCAGTAAGTTTCAACAGCGATACAAGCAGTGAAAATATTTCCACTGTCATTGGTAACACTGGA AATTTCATGGTGAAACTCAATGCGCTGGAGAAAAATTCAAAAGCCAAAGTGTTATCTCACCCTTCTGTGGTGACCTTAAA TAATGTTCAGGCTGTACTGGATAAAAATGTCACTTTCTACACCAAGTTAGAGGGGGATAAAGTGGCGAAATTAGAATCGG TTACTACGGGGACGTTACTCAGAGTCACACCTAGATTAATCGAGGAATCTGGTCATACAGCCGTGATGCTCAATCTGAAT ATACAGGACGGCCAACAAAGTGAGGCTGTGAGTAGAAGTGATCCCCTCCCTCAGGTACAGAACTCAGAAATATCAACTCA GGCAATCCTTAAATCAGGTGAAAGTCTGTTGATTGGTGGCTTTGTACAGGACAGAGATGAAACATCTGACCACAAGATTC CCCTATTGGGTGATATTCCCTTACTCGGAGGCTTATTTAGAAGTACTGAACATCATACACAAAGCGTGATGCGTCTGTTT CTAATCAAAGCGGAACCGGTTAACCAAGGAGATTAA Protein sequence : MKQLFLLLLLLNLNFAYATPLASIKWQGEPFVMLSRGTALSSVLQDFANNYGVPISVSNKITDTFIGQIQHQEPKQIIKE LSRRYSLVWYYSNEVLFVYKVSEVTNEILSLTSLSAVRASQYIKAAGMLEAGVCKTKPMTGISGLQVSGVPACIKNVTKF TKQLDANAKQVAETKEIVRVYPLKYASATDSVYQYREQSVKIPGLVNVLKEMELGNQVANAVSGTVSNVSGPVFAADSRR NAIIVRGSSQDVTTYASLIKQLDNKPTMIEISVSILDIDASDFKQLGVDWSASAQLGNGSVSFNSDTSSENISTVIGNTG NFMVKLNALEKNSKAKVLSHPSVVTLNNVQAVLDKNVTFYTKLEGDKVAKLESVTTGTLLRVTPRLIEESGHTAVMLNLN IQDGQQSEAVSRSDPLPQVQNSEISTQAILKSGESLLIGGFVQDRDETSDHKIPLLGDIPLLGGLFRSTEHHTQSVMRLF LIKAEPVNQGD |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0257 | YP_002345337.1 | type III secretion protein | Virulence | Not named | Protein | 4e-125 | 54 |
| spiA | NP_456134.1 | putative outer membrane secretory protein | Virulence | SPI-2 | Protein | 2e-106 | 48 |
| spiA | NP_805065.1 | outer membrane secretory protein | Virulence | SPI-2 | Protein | 2e-106 | 48 |
| spiA | AAC44301.1 | SpiA | Virulence | SPI-2 | Protein | 3e-106 | 48 |
| ssaC | NP_460359.1 | outer membrane secretin precursor | Virulence | SPI-2 | Protein | 4e-106 | 48 |
| ssaC | YP_216402.1 | secretion system apparatus protein SsaC | Virulence | SPI-2 | Protein | 2e-106 | 48 |
| escC | AFO66299.1 | putative type III complex subunit | Virulence | SESS LEE | Protein | 2e-105 | 46 |
| escC | AFO66408.1 | putative type III complex subunit | Virulence | SESS LEE | Protein | 2e-105 | 46 |
| unnamed | AAL06362.1 | EscC | Virulence | LEE | Protein | 6e-103 | 44 |
| escC | AAL57535.1 | EscC | Virulence | LEE | Protein | 3e-104 | 44 |
| escC | CAC81855.1 | EscC protein | Virulence | LEE II | Protein | 3e-104 | 44 |
| escC | YP_003236095.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 8e-103 | 44 |
| escC | CAI43881.1 | EscC protein | Virulence | LEE | Protein | 3e-104 | 44 |
| escC | AAC38377.1 | EscC | Virulence | LEE | Protein | 2e-102 | 44 |
| escC | YP_003223482.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 4e-104 | 44 |
| escC | YP_003232146.1 | T3SS structure protein EscC | Virulence | LEE | Protein | 4e-104 | 44 |
| escC | AAK26708.1 | EscC | Virulence | LEE | Protein | 3e-104 | 44 |
| escC | NP_290275.1 | hypothetical protein | Virulence | LEE | Protein | 4e-103 | 44 |
| ECs4575 | NP_312602.1 | EscC | Virulence | LEE | Protein | 4e-103 | 44 |
| escC | AAC31520.1 | L0041 | Virulence | LEE | Protein | 3e-103 | 44 |
| escC | ACU09465.1 | type III secretion outer membrane pore YscC/HrcC family | Virulence | LEE | Protein | 3e-103 | 44 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SVI_2260 | YP_003557009.1 | type III secretion system EscC protein | VFG0495 | Protein | 1e-106 | 48 |
| SVI_2260 | YP_003557009.1 | type III secretion system EscC protein | VFG0723 | Protein | 1e-102 | 44 |
| SVI_2260 | YP_003557009.1 | type III secretion system EscC protein | VFG0819 | Protein | 2e-103 | 44 |
