Name : SVI_2254 (SVI_2254) Accession : YP_003557003.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Virulence Product : type III secretion system chaperone, SycD family Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG5010 EC number : - Position : 2581881 - 2582354 bp Length : 474 bp Strand : - Note : - DNA sequence : ATGAAACAGCAAGAATTTGAAGTACTGGAACATTTTCTTCAACGCGGTGGCTCTTTACGTATGCTGGCTGATGTGGAGCA GGCTGATCTTAATGTCTTATATCAATATGCACTGCAACTGATGGCTTGCCGGGATCTGCAAGGGGCTAAACGAATTTTCT ATCTCTTAATGCGGATCGACCAGTGGAGTTATGACTATTTATTCTCTCTGGGGATATGTTGTCAGCAATTAGGTGAACAT GAAGAAGCCATTTTCTGTTTAGGGCGAGCAGGTATGATCAAAGTCGATAACCCTCTTCCGGCTTACCATGCGGGATTAAG TTATATCGCATTAGGCAATAAAGAGTATGCAGAAAAAAGCTTCAATGCCAGCTTACGCTGGTGCCAAGGTCACCCTGAAA GTGGTGGTATTGCAGCGAGTGCGCAGCAAGGGCTAGCGACACTCACTAAGGAGAACGCTTATGTCACTCAATAG Protein sequence : MKQQEFEVLEHFLQRGGSLRMLADVEQADLNVLYQYALQLMACRDLQGAKRIFYLLMRIDQWSYDYLFSLGICCQQLGEH EEAIFCLGRAGMIKVDNPLPAYHAGLSYIALGNKEYAEKSFNASLRWCQGHPESGGIAASAQQGLATLTKENAYVTQ |
Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
SC1420 | YP_216407.1 | secretion system chaperone protein SscA | Virulence | SPI-2 | Protein | 6e-20 | 43 |
sscA | NP_456129.1 | putative Type III secretion system chaperone protein | Virulence | SPI-2 | Protein | 4e-20 | 43 |
sscA | NP_805070.1 | type III secretion system chaperone protein | Virulence | SPI-2 | Protein | 4e-20 | 43 |
sscA | NP_460364.1 | secretion system chaperone | Virulence | SPI-2 | Protein | 4e-20 | 43 |
sscA | AAC28880.1 | putative secretion chaperone | Virulence | SPI-2 | Protein | 2e-20 | 43 |
sscA | CAA12186.1 | SscA | Virulence | SPI-2 | Protein | 2e-20 | 43 |
Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
SVI_2254 | YP_003557003.1 | type III secretion system chaperone, SycD family | VFG0500 | Protein | 1e-20 | 43 |