Gene Information

Name : SVI_2254 (SVI_2254)
Accession : YP_003557003.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : type III secretion system chaperone, SycD family
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG5010
EC number : -
Position : 2581881 - 2582354 bp
Length : 474 bp
Strand : -
Note : -

DNA sequence :
ATGAAACAGCAAGAATTTGAAGTACTGGAACATTTTCTTCAACGCGGTGGCTCTTTACGTATGCTGGCTGATGTGGAGCA
GGCTGATCTTAATGTCTTATATCAATATGCACTGCAACTGATGGCTTGCCGGGATCTGCAAGGGGCTAAACGAATTTTCT
ATCTCTTAATGCGGATCGACCAGTGGAGTTATGACTATTTATTCTCTCTGGGGATATGTTGTCAGCAATTAGGTGAACAT
GAAGAAGCCATTTTCTGTTTAGGGCGAGCAGGTATGATCAAAGTCGATAACCCTCTTCCGGCTTACCATGCGGGATTAAG
TTATATCGCATTAGGCAATAAAGAGTATGCAGAAAAAAGCTTCAATGCCAGCTTACGCTGGTGCCAAGGTCACCCTGAAA
GTGGTGGTATTGCAGCGAGTGCGCAGCAAGGGCTAGCGACACTCACTAAGGAGAACGCTTATGTCACTCAATAG

Protein sequence :
MKQQEFEVLEHFLQRGGSLRMLADVEQADLNVLYQYALQLMACRDLQGAKRIFYLLMRIDQWSYDYLFSLGICCQQLGEH
EEAIFCLGRAGMIKVDNPLPAYHAGLSYIALGNKEYAEKSFNASLRWCQGHPESGGIAASAQQGLATLTKENAYVTQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1420 YP_216407.1 secretion system chaperone protein SscA Virulence SPI-2 Protein 6e-20 43
sscA NP_456129.1 putative Type III secretion system chaperone protein Virulence SPI-2 Protein 4e-20 43
sscA NP_805070.1 type III secretion system chaperone protein Virulence SPI-2 Protein 4e-20 43
sscA NP_460364.1 secretion system chaperone Virulence SPI-2 Protein 4e-20 43
sscA AAC28880.1 putative secretion chaperone Virulence SPI-2 Protein 2e-20 43
sscA CAA12186.1 SscA Virulence SPI-2 Protein 2e-20 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_2254 YP_003557003.1 type III secretion system chaperone, SycD family VFG0500 Protein 1e-20 43