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Name : SVI_2235 (SVI_2235) Accession : YP_003556984.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Virulence Product : type III secretion system apparatus protein, HrcV family Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 2565329 - 2567386 bp Length : 2058 bp Strand : - Note : - DNA sequence : ATGAACTTAATTACTCGTTGGTTGAATATAGCGGGAGGCCGATTAGATATTATCCTTAGCGCCATGCTAATGGTGGCTGT ATTCATGATGATTTTACCGCTGCCTACCGCATTAATCGATCTTCTCATCGCATTTAATTTATGTTTATCCATTCTACTAT TGATGATTGCGATATATATTCGCGACCCGCTCGAATTTTCTGTTTTTCCCTCTTTATTATTGATCACGACTTTATATCGT TTAGCGTTGACCGTAAGTACGAGTCGGCTCATTTTATTGCAACATGATGCTGGTGAGATTGTGTATACCTTCGGTAAATT CGTCGTTGGCGGTAACTTAGCTGTCGGGATTATTATATTTACGATTATTACTATCGTGCAGTTCATTGTGATCACAAAAG GCTCTGAACGGGTAGCAGAAGTCAGTGCTCGTTTTTCATTGGATGCAATGCCTGGTAAGCAGATGAGCATCGATGGTGAT ATGCGTGCCGGCATCATTGATGCTCAAGAGGCAAAACGTCAGCGAACCCAAGTGCAAAAAGAGAGTCAGCTTTATGGTGC TATGGACGGTGCGATGAAATTTGTTAAGGGTGATGCAATCGCGAGTATTATCGTTATTTTAGCAAATATTATAGGGGGGA TTGCCGTCGGTGTTATGCAGCATGGCATGTCTGCATCGGAAGCGGTAAATACCTATGCCATATTATCTGTTGGTGATGGT TTGATTTCACAAATCCCTGCGCTGTTAATTTCCCTCACTGCCGGACTGATTGTTACACGAGTGCCAGGCGAAAAGCGTCA AAACTTAGCAAATGAATTGGTGTCGCAAATGGGTCGACAACCATCTTCATTGCAGATGGCTGGAATAATGATGTTTGTTT TTGCCATCATCCCTGGTTTTCCCCTGATAACGTTCGGTTTCTTAGGCTCATTAACTTTTGGTTTCTCCTGGTGGCTAATC CGTAAGAAAAAAATTGCTGAGGAGCAAGGTAGTCCCCATTTTTCAGACACCTCTGCATCCGGAGAAGTCGATGCCGATGG GAATATGTCTCCGGGGGCTATTCCTGTGATGCTTTGTCTTGGGGAGGATGTATCGATTACAGGAGTCAAAGAGGCATTAC AAAAATTACGTTGGCAGCTATTTGAAGAGCTTGGTGTGCCATTACCTGAGATCCAATTGCAAGTCATTAAAAATGGTAGA AAAGGACAATTTGATGTTCTGCTGTATCAAGAGGTTGTGTTGCAACTACAGATAGATCCTGAAGAGTCGCTACTTGTTGA TCAAAATGTCACATTACTTAGCCGGGTTGAATCTCTTAATTTTAATGGTGAAGAGTTACATTGGATCAAGGGGAATGTTG TAGAGCAAGCACTGGAGCAAGGTTTACCTGTACTTAGTAAAGAGACTATACCCGCTTATCTTGTGGGCAAAGTCATCAGA AGGTATGCCGGTGAATTTATCGGTGTACAAGAGACTCGTTATCTGATGGATGCTATCGAGGTGAAGTATGGTGAATTAGT CAAAGAGCTACAACGCGTATTGTCAGTTGGAAAGGTGGCGGACATCCTTCAACGGCTTGTGGATGAGGGGATAGCCATTC GAGATCTGCGTACCATTTTTGAAACCTTAGTTGAGTGGGTCGCTAAAGAGAAAGATGTCATTATGTTAACGGAATATGTA CGTATTGCATTGCGCCGTCATATTCGAAGAAAGTTTGTCTCTCCCCAAGGCTGGATATCTGTACTCATGGTTGGCGATGG GATTGAGAACTTGATCCGAGAATCTATTCGCCAGTCTACTGCTGGATCATACTCTGCATTAGATTTAGAGCAAAGCAACC TTATCTTAACCGCGGTAGTGCAGCAGTTACCTGCTCAGCAATCCTGCGTGTTATTAACTTCACTGGATGTACGTCGTTAT TTGAGGAAAATTGTAGAAAAAGAGTTATTTATGACGCCTGTATTGTCATTCCAGGAGTTAGGGGATGATGCTGAAATAAA GGTTATGGCTCATGTCGATTTGGTGGGAGAGAGTTTAGATGCTGCAATGGCGAGCTAA Protein sequence : MNLITRWLNIAGGRLDIILSAMLMVAVFMMILPLPTALIDLLIAFNLCLSILLLMIAIYIRDPLEFSVFPSLLLITTLYR LALTVSTSRLILLQHDAGEIVYTFGKFVVGGNLAVGIIIFTIITIVQFIVITKGSERVAEVSARFSLDAMPGKQMSIDGD MRAGIIDAQEAKRQRTQVQKESQLYGAMDGAMKFVKGDAIASIIVILANIIGGIAVGVMQHGMSASEAVNTYAILSVGDG LISQIPALLISLTAGLIVTRVPGEKRQNLANELVSQMGRQPSSLQMAGIMMFVFAIIPGFPLITFGFLGSLTFGFSWWLI RKKKIAEEQGSPHFSDTSASGEVDADGNMSPGAIPVMLCLGEDVSITGVKEALQKLRWQLFEELGVPLPEIQLQVIKNGR KGQFDVLLYQEVVLQLQIDPEESLLVDQNVTLLSRVESLNFNGEELHWIKGNVVEQALEQGLPVLSKETIPAYLVGKVIR RYAGEFIGVQETRYLMDAIEVKYGELVKELQRVLSVGKVADILQRLVDEGIAIRDLRTIFETLVEWVAKEKDVIMLTEYV RIALRRHIRRKFVSPQGWISVLMVGDGIENLIRESIRQSTAGSYSALDLEQSNLILTAVVQQLPAQQSCVLLTSLDVRRY LRKIVEKELFMTPVLSFQELGDDAEIKVMAHVDLVGESLDAAMAS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 1e-160 | 59 |
| ssaV | YP_216422.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 5e-138 | 52 |
| ssaV | NP_460379.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 4e-138 | 52 |
| ssaV | CAA70536.1 | secretion system apparatus | Virulence | SPI-2 | Protein | 3e-138 | 52 |
| ssaV | NP_456114.1 | putative type III secretion protein | Virulence | SPI-2 | Protein | 1e-137 | 52 |
| ssaV | NP_805085.1 | secretion system apparatus protein SsaV | Virulence | SPI-2 | Protein | 1e-137 | 52 |
| escV | AFO66414.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 9e-125 | 51 |
| escV | AAC31514.1 | L0035 | Virulence | LEE | Protein | 2e-124 | 50 |
| escV | NP_290269.1 | hypothetical protein | Virulence | LEE | Protein | 3e-124 | 50 |
| escV | ACU09459.1 | EscV protein | Virulence | LEE | Protein | 2e-124 | 50 |
| ECs4569 | NP_312596.1 | hypothetical protein | Virulence | LEE | Protein | 3e-124 | 50 |
| escV | YP_003236089.1 | putative translocator EscV | Virulence | LEE | Protein | 2e-124 | 50 |
| escV | AAC38382.1 | EscV | Virulence | LEE | Protein | 9e-125 | 50 |
| escV | CAI43875.1 | EscV protein | Virulence | LEE | Protein | 3e-125 | 50 |
| escV | CAC81861.1 | EscV protein | Virulence | LEE II | Protein | 1e-124 | 50 |
| escV | YP_003232152.1 | T3SS structure protein EscV | Virulence | LEE | Protein | 8e-125 | 50 |
| escV | YP_003223476.1 | translocator EscV | Virulence | LEE | Protein | 4e-125 | 50 |
| escV | AAK26714.1 | EscV | Virulence | LEE | Protein | 6e-125 | 50 |
| escV | AAL57541.1 | EscV | Virulence | LEE | Protein | 6e-125 | 50 |
| escV | AFO66296.1 | putative LEE-encoded type III secretion system factor | Virulence | SESS LEE | Protein | 6e-125 | 50 |
| unnamed | AAL06368.1 | EscV | Virulence | LEE | Protein | 9e-124 | 49 |
| lssD | AAO18050.1 | LssD | Virulence | TTSS locus | Protein | 2e-119 | 46 |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 5e-93 | 41 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 5e-88 | 41 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 2e-88 | 41 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 2e-88 | 41 |
| hrcV | AAP34346.1 | HrcV | Virulence | Hrp PAI | Protein | 8e-53 | 41 |
| XC_3013 | YP_244081.1 | HrcV protein | Virulence | Hrp PAI | Protein | 6e-53 | 41 |
| hrcV | NP_636603.1 | protein HrcV | Virulence | Hrp PAI | Protein | 6e-53 | 41 |
| hrcV | YP_362156.1 | HrcV protein | Virulence | Hrp PAI | Protein | 3e-53 | 41 |
| hrcV | NP_640760.1 | HrcV protein | Virulence | Hrp PAI | Protein | 9e-53 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SVI_2235 | YP_003556984.1 | type III secretion system apparatus protein, HrcV family | VFG0514 | Protein | 2e-138 | 52 |
| SVI_2235 | YP_003556984.1 | type III secretion system apparatus protein, HrcV family | VFG0813 | Protein | 1e-124 | 50 |
| SVI_2235 | YP_003556984.1 | type III secretion system apparatus protein, HrcV family | VFG0729 | Protein | 5e-125 | 50 |
| SVI_2235 | YP_003556984.1 | type III secretion system apparatus protein, HrcV family | VFG0198 | Protein | 2e-106 | 46 |
| SVI_2235 | YP_003556984.1 | type III secretion system apparatus protein, HrcV family | VFG0384 | Protein | 2e-117 | 45 |
| SVI_2235 | YP_003556984.1 | type III secretion system apparatus protein, HrcV family | VFG0064 | Protein | 2e-120 | 45 |
| SVI_2235 | YP_003556984.1 | type III secretion system apparatus protein, HrcV family | VFG2126 | Protein | 5e-96 | 42 |
| SVI_2235 | YP_003556984.1 | type III secretion system apparatus protein, HrcV family | VFG1780 | Protein | 4e-92 | 41 |
