Gene Information

Name : SVI_2230 (SVI_2230)
Accession : YP_003556979.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : type III secretion system EscR protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 2561463 - 2562113 bp
Length : 651 bp
Strand : -
Note : -

DNA sequence : 
ATGAGCGTACTCGATAATCCTGTCCAACTTATTATTCTACTGTTTTGCCTGTCAATCTTGCCTTTGTTTGCAGTGATGGG
CACATCATTTCTAAAGTTATCTATCGTACTTTCTATGTTGCGTAATGCGCTAGGGATACAGCAAATTCCACCCAATATGG
CGATTTATGGTTTATCACTAATCTTAACGCTATTTATTATGGCGCCTATTGGGATGGAAATTAATGATAACCTGAAGGTT
CACCCTATCGTTTTTGATTCGGCAAATATCATCGAACAGGTTAATACCTTAGCCATTATTCCTTATCGCGACTTTTTAGA
AAAGAACACCAGTAAAACTCAATTAGATTTTTTTGCCAATATTGGCCATAAAACCTGGCCTGATAAGTACCAAGATGTAT
TGTCCAAAGATTCGCTATTTGTGATGTTACCTGCGTTCACTATGAGCCAGTTAATTGAAGCGTTCAAAATTGGCTTATTA
ATATACTTACCATTTGTTGCAATCGACCTTATTGTGTCCAATATTTTGTTAGCGATGGGGATGATGATGGTGTCACCCAT
GACCATATCTCTGCCATTTAAGTTATTGATATTTATATTGATGGGGGGGTGGGAAAAGCTAGTCAGTCAACTGATGGTGT
CATTCTCATGA

Protein sequence : 
MSVLDNPVQLIILLFCLSILPLFAVMGTSFLKLSIVLSMLRNALGIQQIPPNMAIYGLSLILTLFIMAPIGMEINDNLKV
HPIVFDSANIIEQVNTLAIIPYRDFLEKNTSKTQLDFFANIGHKTWPDKYQDVLSKDSLFVMLPAFTMSQLIEAFKIGLL
IYLPFVAIDLIVSNILLAMGMMMVSPMTISLPFKLLIFILMGGWEKLVSQLMVSFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-55 62
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 6e-65 60
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-58 59
escR AAK26700.1 EscR Virulence LEE Protein 2e-58 59
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-58 59
escR AAL57527.1 EscR Virulence LEE Protein 2e-58 59
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-58 59
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-58 59
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-58 59
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-58 59
escR AAC31528.1 L0049 Virulence LEE Protein 2e-58 59
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-58 59
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 9e-57 58
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 9e-57 58
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 2e-57 58
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 2e-57 58
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 2e-57 58
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-57 58
escR AAC38369.1 EscR Virulence LEE Protein 1e-57 58
escR AFO66317.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-53 55
escR AFO66400.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 2e-53 55
lscR AAO18040.1 LscR Virulence TTSS locus Protein 4e-55 55
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 5e-38 46
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 5e-38 46
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 5e-38 46
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 1e-38 46
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 4e-37 45
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 3e-37 45
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 4e-35 43
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 4e-35 43
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 1e-39 43
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 3e-36 42
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 3e-36 42
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 8e-40 41
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 7e-40 41
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 1e-39 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 1e-39 41
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 7e-40 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 1e-39 41
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 1e-39 41
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 5e-40 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_2230 YP_003556979.1 type III secretion system EscR protein VFG0827 Protein 8e-59 59
SVI_2230 YP_003556979.1 type III secretion system EscR protein VFG0519 Protein 8e-58 58
SVI_2230 YP_003556979.1 type III secretion system EscR protein VFG0715 Protein 6e-58 58
SVI_2230 YP_003556979.1 type III secretion system EscR protein VFG0188 Protein 2e-55 54
SVI_2230 YP_003556979.1 type III secretion system EscR protein VFG0394 Protein 9e-54 52
SVI_2230 YP_003556979.1 type III secretion system EscR protein VFG0044 Protein 5e-43 45
SVI_2230 YP_003556979.1 type III secretion system EscR protein VFG2131 Protein 6e-36 42
SVI_2230 YP_003556979.1 type III secretion system EscR protein VFG1012 Protein 7e-35 41
SVI_2230 YP_003556979.1 type III secretion system EscR protein VFG2494 Protein 1e-32 41