Gene Information

Name : SVI_2228 (SVI_2228)
Accession : YP_003556977.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : type III secretion system apparatus protein, SpaR/YscT family
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4791
EC number : -
Position : 2560394 - 2561083 bp
Length : 690 bp
Strand : -
Note : -

DNA sequence : 
ATGGGGAGTGCACTCATTCGAAACAGTTTAGTCTTGCTATTCGCCTTACCAACATTACACGCCATGGCTGATATGCAAGA
GGTCATTTTACAAGCTGATATATTAGGTGTGGTTAACTTATATGGGAAGGAGATATTGGTCGGTTTTTTGTTAGGTTTCT
GCGCTGCAATCCCTTTTTGGGCCATAGATATGGCAGGTTTTGTTATTGACACCATGCGCGGGGCTTCCATGTCCACCGTT
CTCAACCCACTCATGGGGCTACAATCTTCTATTTATGGCATGTTGTTTACGCAAGTGTTGACGGTACTCTTTCTCGTCTC
TGGCGGATTTAATCACCTACTTACCGCCATGTATCAGTCCTATAATGAGCTACCACCGGGTTTTGAGCTGAACTTATCAC
AGCAGTTATTGACCTTCTTTAATCAAGAGTGGCTGTTGATGTGCCAATTGTGTCTAAGCTTTGCAATGCCCGCCATGGTT
ATCATGATTTTAGTCGATGTAGCCTTGGGACTGGTAAATCGTTCAGCCCAACAACTTAATGTATTTTTCTTATCTATGCC
GATTAAAAGCGCGCTAGTGTTATTACTGCTTATTTACAGTTTACAGTTTGCACTTTCTCATTATCTTGAGCGTATTACAG
GAGTAGAACAGCAAGTAGGCACATTGTTTCGCCTTTTGTCTGGTCATTAA

Protein sequence : 
MGSALIRNSLVLLFALPTLHAMADMQEVILQADILGVVNLYGKEILVGFLLGFCAAIPFWAIDMAGFVIDTMRGASMSTV
LNPLMGLQSSIYGMLFTQVLTVLFLVSGGFNHLLTAMYQSYNELPPGFELNLSQQLLTFFNQEWLLMCQLCLSFAMPAMV
IMILVDVALGLVNRSAQQLNVFFLSMPIKSALVLLLLIYSLQFALSHYLERITGVEQQVGTLFRLLSGH

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0272 YP_002345354.1 type III secretion apparatus protein Virulence Not named Protein 2e-43 52
ssaT NP_805092.1 type III secretion protein Virulence SPI-2 Protein 2e-38 49
ssaT YP_216429.1 secretion system apparatus protein SsaT Virulence SPI-2 Protein 1e-38 49
ssaT NP_456107.1 putative type III secretion protein Virulence SPI-2 Protein 2e-38 49
ssaT CAA68201.1 secretion system apparatus, SsaT Virulence SPI-2 Protein 1e-37 48
ssaT NP_460386.1 type III secretion system apparatus protein Virulence SPI-2 Protein 2e-37 48
lscT AAO18038.1 LscT Virulence TTSS locus Protein 8e-22 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_2228 YP_003556977.1 type III secretion system apparatus protein, SpaR/YscT family VFG0521 Protein 7e-38 48