Gene Information

Name : SVI_2227 (SVI_2227)
Accession : YP_003556976.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Virulence
Product : type III secretion system EscU protein
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4792
EC number : -
Position : 2559326 - 2560375 bp
Length : 1050 bp
Strand : -
Note : -

DNA sequence : 
GTGGCTGAGAAAACAGAAAAACCAACGGAAAAGCAACTTAAAGAAGCGAGAAACCGAGGGCAGGTGATAAAGAGCCCAGA
AATTGTTACTGGCTTACAGATGGCTATTATTTTGGGCTATTTTCTGTTTGAAGGCCAGAACTTAATGCAGTCAATTATGT
ACCTCATTAATAGCACCATTGATGCCATCAACTTACCCTTGGAAACGGCAGCCAATCAGATCCTCGATAGGTTTGCTATG
GTGGCATTACGATTTTTGGGGGGATTAGCGCTAGTACTTATATGTACGATAATTGTTGGGAATATCGCTCAAACTGGTCC
TGTATGGGCGGCGGAATCATTAAAGCCTAGTATGAATAAGCTAAACGTGGTCAATAACGCCAAGCAAATGATTTCATGGA
AAAGCGTGTTCGAGCTCGTGAAAAATCTAGTAAAGGTTACAGTTCTCTGTCTTGTATTTTATTACTTGTTACATCGATAT
GTTAATTCTTTTCAATATCTCCCCTTGTGTGGAGAAGAGTGTGGTATTGAAGTGATCTCGACGCTGATCACATGGCTCTG
GGGATGTTTTTTAGGTTGCTATGTATTTTTTGGCGTGGCCGATTATGCATTTCAACGGTTTAATTTAATGAAAGAATTGA
AAATGTCGAAAGATGACATCAAACAAGAATATAAGGACTCGGAGGGAAATCCTGAGGTAAAACAGAAGCGACGTGAGATA
CAAAGAGAAGTTGCATCGGGAAGTTTGGCTACTAATGTAAAAAAATCATCCGTAGTTGTACGTAATCCAACTCATTTAGC
TATCTGTTTGTATTATCAAGCTGGTGAGACTCCGCTGCCTATGGTACTTGAAAAGGCTGAAGATCATATGGCGTTACATA
TTGTAGGCATGGCAGAGAAAGCCGGTATTCCTGTTGTTGAGAATATTCCACTGGCCCGGGCTATCTATAGTCAAATTGAG
ACGGGCTCTCCAATTTCCGAAGACCTATTTGAACCCGTTGCGGATCTGCTACGTGTAGTGATGGCGATACCTTATGATGA
TTACGACTAG

Protein sequence : 
MAEKTEKPTEKQLKEARNRGQVIKSPEIVTGLQMAIILGYFLFEGQNLMQSIMYLINSTIDAINLPLETAANQILDRFAM
VALRFLGGLALVLICTIIVGNIAQTGPVWAAESLKPSMNKLNVVNNAKQMISWKSVFELVKNLVKVTVLCLVFYYLLHRY
VNSFQYLPLCGEECGIEVISTLITWLWGCFLGCYVFFGVADYAFQRFNLMKELKMSKDDIKQEYKDSEGNPEVKQKRREI
QREVASGSLATNVKKSSVVVRNPTHLAICLYYQAGETPLPMVLEKAEDHMALHIVGMAEKAGIPVVENIPLARAIYSQIE
TGSPISEDLFEPVADLLRVVMAIPYDDYD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
YPO0273 YP_002345355.1 secretion system apparatus protein SsaU Virulence Not named Protein 4e-85 50
ssaU YP_216430.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 2e-64 44
ssaU NP_460387.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 9e-66 44
ssaU NP_456106.1 putative type III secretion protein Virulence SPI-2 Protein 3e-66 44
ssaU NP_805093.1 secretion system apparatus protein SsaU Virulence SPI-2 Protein 3e-66 44
ssaU CAA68202.1 secretion system apparatus, SsaU Virulence SPI-2 Protein 7e-66 44
escU AAC31525.1 L0046 Virulence LEE Protein 4e-68 43
escU YP_003223487.1 T3SS structure protein EscU Virulence LEE Protein 2e-68 43
escU ACU09470.1 secretion system apparatus protein SsaU Virulence LEE Protein 4e-68 43
escU AAK26703.1 EscU Virulence LEE Protein 1e-68 43
escU AAL57530.1 EscU Virulence LEE Protein 1e-68 43
escU CAI43886.1 EscU protein Virulence LEE Protein 1e-68 43
escU YP_003236100.1 T3SS structure protein EscU Virulence LEE Protein 5e-68 43
escU NP_290280.1 secretion system apparatus protein SsaU Virulence LEE Protein 5e-68 43
escU AAC38372.1 EscU Virulence LEE Protein 4e-68 43
ECs4580 NP_312607.1 secretion system apparatus protein SsaU Virulence LEE Protein 5e-68 43
escU AFO66307.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-64 42
escU AFO66403.1 putative LEE-encoded type III secretion system factor Virulence SESS LEE Protein 4e-64 42
escU YP_003232141.1 secretion system apparatus protein SsaU Virulence LEE Protein 7e-68 42
escU CAC81850.1 EscU protein Virulence LEE II Protein 5e-68 42
unnamed AAL06357.1 EscU Virulence LEE Protein 4e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SVI_2227 YP_003556976.1 type III secretion system EscU protein VFG0522 Protein 4e-66 44
SVI_2227 YP_003556976.1 type III secretion system EscU protein VFG0824 Protein 2e-68 43
SVI_2227 YP_003556976.1 type III secretion system EscU protein VFG0718 Protein 2e-68 43