Gene Information

Name : SVI_2029 (SVI_2029)
Accession : YP_003556778.1
Strain : Shewanella violacea DSS12
Genome accession: NC_014012
Putative virulence/resistance : Unknown
Product : aspartate aminotransferase
Function : -
COG functional category : E : Amino acid transport and metabolism
COG ID : COG0436
EC number : -
Position : 2336701 - 2337915 bp
Length : 1215 bp
Strand : -
Note : -

DNA sequence :
GTGCGACCAATAATCAAATCGAACAAGCTAGATACAGTCTGTTATGACATCAGAGGCCCGGTACACAAGGAAGCCAGGCG
ACTCGAAGATGAAGGACACAGAATTTTAAAGCTTAATATTGGTAATCCGGCACCGTTTGGTTTCGAAGCCCCGGAAGAGA
TAGTTCGCGATGTCATTTTAAATCTGCCTAGTGCCCAAGGCTATTGTGAGTCTAAAGGTCTTTTCTCTGCCAGAAAGGCT
ATTGTGCAGCATTATCAGTCGCAGGGGATCTTCGGTGTCGACATCGAAGATATCTATATTGGTAATGGCGTATCTGAATT
GATTGTCATGGCCATGCAAGGCCTGTTAAATTCCGGCGATGAAGTATTGATCCCCTCTCCGGATTACCCACTTTGGACGG
CGGCTGTTCATCTATCTGGCGGTACTGCACGGCACTACCGCTGTGATGAAGAGGCTGACTGGTTTCCCGATCTGCAAGAT
ATCAAGTCTAAGATCACCCCAAGGACCCGGGCCCTGGTATTGATCAACCCCAATAACCCCACAGGTGCAGTGTATTCCAG
AGCCTTACTGTTAGAGGCTGTCGAGATCTGTAGACAACACGATCTCATCCTGTTTGCCGATGAAATCTATGACAAGATCC
TCTACGATGAGGCTCAGCATATCCCAGCCGCAAGCCTATCTGATGATATCTTGACCGTCACCTTTAATGGTCTGTCAAAA
TCATACCGAGCGGCTGGTTTTCGCGTCGGTTGGATGATGCTTTCGGGTAATCTTAAGGCGGCTAAGAGTTATATCGAAGG
CCTTGAAATGCTGGCTTCCATGCGTCTTTGTTCCAATGTGCCTAACCAGCATGCCATTCAAACGGCACTTGGAGGCTATC
AGAGCATTAACGAACTGCTTGTGGGTGATGGCCGCCTCAAGGTGCAGCGTGATCTCTGCGTCGACCTGCTCAATCAAATC
CCCGGCATCAGCGTTAAATGTCCCAAGGGTGCCATGTATGCTTTTCCTAAACTTGACGCCAAGAAGTTCAATATTCGCGA
TGATGAACGTCTGGTGCTGGATCTATTGAAAGAGAAGAAAATATTACTGGTCCATGGCACCGCATTCAACTGGCCCGAGC
CCGATCACTTACGTGTCGTCTTCTTACCCCATAAGGAAGATCTCGAAAAGGCGCTAATGGATTTTGGCGAGTTTATGGAC
GGCTATCGTCAATAA

Protein sequence :
MRPIIKSNKLDTVCYDIRGPVHKEARRLEDEGHRILKLNIGNPAPFGFEAPEEIVRDVILNLPSAQGYCESKGLFSARKA
IVQHYQSQGIFGVDIEDIYIGNGVSELIVMAMQGLLNSGDEVLIPSPDYPLWTAAVHLSGGTARHYRCDEEADWFPDLQD
IKSKITPRTRALVLINPNNPTGAVYSRALLLEAVEICRQHDLILFADEIYDKILYDEAQHIPAASLSDDILTVTFNGLSK
SYRAAGFRVGWMMLSGNLKAAKSYIEGLEMLASMRLCSNVPNQHAIQTALGGYQSINELLVGDGRLKVQRDLCVDLLNQI
PGISVKCPKGAMYAFPKLDAKKFNIRDDERLVLDLLKEKKILLVHGTAFNWPEPDHLRVVFLPHKEDLEKALMDFGEFMD
GYRQ

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
aspC YP_005686363.1 Aminotransferase AlaT Not tested PiCp 7 Protein 7e-114 57
aspC YP_005682179.1 Aminotransferase AlaT Not tested PiCp 7 Protein 7e-114 57
aspC YP_005684271.1 Aminotransferase AlaT Not tested PiCp 7 Protein 7e-114 57
aspC YP_003784329.1 aspartate aminotransferase Not tested PiCp 7 Protein 7e-114 57