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Name : SVI_1496 (SVI_1496) Accession : YP_003556245.1 Strain : Shewanella violacea DSS12 Genome accession: NC_014012 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1710725 - 1712659 bp Length : 1935 bp Strand : + Note : - DNA sequence : TTGCAAGTTTTCTTTTCTTTAGATCGCACCTATAAACGCCTTGTCAGTGTTGGAATTGATGCTGTCTGTTTAGCTTTTTC GTTTTGGCTAGCGGTAATGGTACGTACCGATACTACTGATTCTATTACTAATACTGGATATTGGTTTTTGATTGCACTTG TTAGCCCCATTAGTATTTTGGCTTTTACTAAATTAGGGCTGTATCGAGCAGTGCTTAGATATCTGAGTTTACAGGCTTTA ACTGCTATATTTATTGGTGTTTTGATTTCGACAGTCAGCTTAGTGTTTATCTCCTACTTAGCAGATCTTGGTCTACCAAG AACTGTCCCTATTATATACGCAGCATTTGCTCTCGTGCTTATAGGTGGCTCAAGAGGAATCATACGCGCAGTTGTAGGCT CGGGTATGAAGAAGGAAGGTGAACCCGTCATTATTTATGGAGCGGGTGTAAGTGGTCGCCAACTGGTTACCGCACTTATG CAGAGTCATGAATACTACCCTTTTGCATTTGTCGATGATGACGACTCGACTCATGGAAGTGTTATACAGGGGGTCCATGT TCATTCACCTTCGATAATACGGAAATTGATTAAGCAAAAGCAAGCGACTAAAGTGCTGTTGGCTATACCCAGTGCTTCAC GTCTACGTAGGAAAGAAATTTTATTGTCTTTAGAGCCTCTAGCTGTTCAAGTTCTAACATTACCTGCCATGGCGGATCTT GTTAGTGGGAATAAGCTCTACAGCGACATTAAAGAAGTTGAAATTGATGATCTCCTTGGGCGTGATGCTGTAGCTCCTAG ACAAGATTTACTTGCTGACAATATCTTCGACAAAGTTGTTATGGTTACTGGGGCGGGTGGTTCCATCGGCTCTGAGCTAT GTCGTCAAATTTTAAAACAGAAACCTAAGAAGCTAGTGTTATTCGAGTTATCTGAATTTGGTCTCTATTCCATCGAAAAA GAGCTATCAGCTAGTGCTAAGGAAAGTGGCTTAGAGGTAGAAATCTTACCTATGCTTGGCTCTGTACAACGTGAAAATCG TGTATTTGCTGTTATGGACTCTTTCAAGGTTCAAACTGTATACCATGCCGCAGCCTATAAACACGTGCCGTTAGTCGAGC ATAATGTTGTAGAAGGAGTTCGTAACAACGTATTTGGCACCATGTATACTGCCAGAGCAGCTATTGCAGCCAAAGTAGAA ACATTCGTATTGATTTCTACAGATAAGGCTGTGAGACCTACAAATGTCATGGGGACAACGAAACGCATGGCAGAGCTGTC TTTACAGGCTTTGTCGAAAGAGAATCACTCTACGCGCTTCTGTATGGTACGTTTTGGTAATGTTTTAGGCTCATCAGGCT CTGTTGTCCCATTGTTCAGAAAACAAATCGCCGCAGGTGGTCCAGTGACTGTTACTCATCCCGAAATAACTCGTTTCTTT ATGACTATCCCTGAAGCTTCTCAGCTAGTGATTCAAGCTGGTGCAATGGGTAAAGGTGGGGACGTATTTGTCCTTGATAT GGGCGAGTCGGTTAAGATTGTTGACTTAGCATCTAAGATGATCCGCTTAAGTGGCTTTGAAGTTAGAGATTCTATTAATC CGGCTGGGGATATCGAAATTGTGTTTACAGGGTTAAGGCCTGGTGAGAAGCTCTACGAAGAGCTCTTGATTGGTGATGAT GTTACTGGTACGGATCATGAGCGGATCATGACTGCTAATGAAGCTTATCTTTCTTGGGAAGAGTTGGAACTCATTCTTAG TAAACTAGATATGGCATGTCATGAGTTTAACCATGAGTTGATTCGTGACATATTGCTCAAGTCACCAACAGGTTTCAATC CCACTGATGGTATTTGCGATCTAGTTTGGAAAGTTAAAAACGAGCAGAAAAATCAAGAAGTGAATAATGGCAAGGTTATT TCTTTAGTTTCTTAA Protein sequence : MQVFFSLDRTYKRLVSVGIDAVCLAFSFWLAVMVRTDTTDSITNTGYWFLIALVSPISILAFTKLGLYRAVLRYLSLQAL TAIFIGVLISTVSLVFISYLADLGLPRTVPIIYAAFALVLIGGSRGIIRAVVGSGMKKEGEPVIIYGAGVSGRQLVTALM QSHEYYPFAFVDDDDSTHGSVIQGVHVHSPSIIRKLIKQKQATKVLLAIPSASRLRRKEILLSLEPLAVQVLTLPAMADL VSGNKLYSDIKEVEIDDLLGRDAVAPRQDLLADNIFDKVVMVTGAGGSIGSELCRQILKQKPKKLVLFELSEFGLYSIEK ELSASAKESGLEVEILPMLGSVQRENRVFAVMDSFKVQTVYHAAAYKHVPLVEHNVVEGVRNNVFGTMYTARAAIAAKVE TFVLISTDKAVRPTNVMGTTKRMAELSLQALSKENHSTRFCMVRFGNVLGSSGSVVPLFRKQIAAGGPVTVTHPEITRFF MTIPEASQLVIQAGAMGKGGDVFVLDMGESVKIVDLASKMIRLSGFEVRDSINPAGDIEIVFTGLRPGEKLYEELLIGDD VTGTDHERIMTANEAYLSWEELELILSKLDMACHEFNHELIRDILLKSPTGFNPTDGICDLVWKVKNEQKNQEVNNGKVI SLVS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 5e-81 | 48 |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-84 | 46 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| SVI_1496 | YP_003556245.1 | polysaccharide biosynthesis protein | VFG0029 | Protein | 6e-125 | 50 |
| SVI_1496 | YP_003556245.1 | polysaccharide biosynthesis protein | VFG1300 | Protein | 7e-86 | 48 |
