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Name : Amico_0451 (Amico_0451) Accession : YP_003553316.1 Strain : Aminobacterium colombiense DSM 12261 Genome accession: NC_014011 Putative virulence/resistance : Unknown Product : HsdR family type I site-specific deoxyribonuclease Function : - COG functional category : V : Defense mechanisms COG ID : COG0610 EC number : - Position : 482108 - 485302 bp Length : 3195 bp Strand : + Note : TIGRFAM: type I site-specific deoxyribonuclease, HsdR family; PFAM: protein of unknown function DUF450; type III restriction protein res subunit; KEGG: dma:DMR_15220 type I restriction enzyme R protein; SMART: DEAD-like helicase DNA sequence : ATGGCTTTTTGCGAGTGCCATTTGGAAGAAGCCGCTCTTGAATGGTTTGAAGAACTAGGTTATGAGGTGGTTTTTGCACC AGATATTGCTCCAGAAGGAACATATCCTGAACGTACCTATTATAGCGATGTAGTACTGACAGAGAGATTAAAAGAGGCTC TTGCACGAATAAATCCAGATCTTCCTGACGATGCGCTGGAAGATGGGTTTAGGCAGATAATGTTTCCTCAGAGCCCTAGC CTCATTATGAACAATAAAACCTTCCAGAAAATGATCACTGATGGCATTGACGTTCAGGTAAAACAGGAAGATGGCGGATA TCGCACTGAAAAAGCCTATATTTTTGATTTAGAAGCACCTTCCAACAATGACTTTTTAGTAGCGAATCAGTTTACTGTTG TAGAGCATGATAAAGAAAAACGACCAGATATAGTTGTATTTGTTAATGGCATTCCATTGGTCGTTATAGAACTGAAAAAT GCAAGTGACGAGAATGTAGATATTACTGATGCTTTTAACCAGCTTCAAACCTATAAAAAGACTATTCCTTCCTTGTTTAC GTATAATTCCTTTACGGTTATCAGTGATGGTGTAAATGCCAGAGCTGGAACTCTCACATCTAATGAAGACCGCTTTATGG CTTGGCGCACTATTGATGGTGATGATGTGGCACCCCTCTGTATTCCTCAGCTTGAAGTATTGATTAAAGGAATGTTTTTG AAAGACCGCTTCCTTGATATTATCAGGCATTTCGTGTTGTTCCAAAGTGATGGTAAAGAAATCAAAAAGATTTTGGCAGG ATATCATCAGTATCATGCCGTAAATAAGGCTCTTCAAAGCACCCAGCGCGCAACGATGGAACAAGGTGATAGAAGAGTAG GCGTTATTTGGCATACTCAGGGCAGCGGTAAAAGCCTTTCTATGGTTTTTTATGCGGGGAAACTGGTTATTGATGAAGAA CTTGAAAACCCGACAATTGTAGTTATTACAGATAGAAACGATTTGGACGACCAGCTGTTCAGCACGTTTCTTAAAAGCGA AGAGCTCTTAAGAAATACGCCGGTACAGGCACAAGACAGAGTTCATCTTAGAGAGCTTCTGAATAACCGTACCAGCGGCG GCATTATCTTTACAACCATTCAGAAGTTTGCCCCTTTTACCAATGAGACAAATGGAGAAGTGATAGATTTTAATAGATGG GGCAGGGTTGCGGAAAATTCTTCTCCCTACACTGCGAATACGATGCTTACAGATCGGCGGAATGTGGTTGTTATTGCCGA TGAGGCTCACAGAAGTCAATACGGTTTTGGTGCAGAAATTGTAATGGGAAAAACAGAAGCAGATGTAAAGTACGGTTATG CAAAGTATATGCGGGACAGCCTTCCCAACGCTTCTTATATAGGCTTTACAGGAACACCTGTAGAACTGACAGATAAAAAT ACGAGAGTGGTTTTTGGGGATTATATCGATATCTATGATATGACAAGGGCTGTAGAAGATGGCACAACGGTTAAGATTTT TTATGAAAGCAGAATTGCTAAATTAGACCTGCCGGAAGAAATGAAACCTCAGATTGATTCAGAATACGAAGAAATCACTG AATATCAGGAGTATAGCCAGAAAGAAAGGCTTAAGAGTAAATGGGCCAGGCTTGAAGCTATAGTTGGGACGGAGCAGCGG ATAAAGCAGATTGCAAAAGATATCGTAGAGCATTTTGAAAAACGGGATCTGGCTCAGGAAAACGAAGGCGGCAAAGGAAT GATTGTTGCCATGAGCCGCAGAATCGCCATAGACCTCTATAAAGAAATAGTTGCTCTGCGTCCCGATTGGCACAGCGATG ACTTAATGTCTGGGAAAATCAAAGTTGTTATAACGGGCAGTTCTTCTGACCCATCAGATTGGCAAGCCTTTATTGGCTCG AAAGCGGATCGTGAAACCCTGGCTAAACGGATGAAAGATAGAAATGACGAGCTTAAGCTGGTTATTGTCCGAGATATGTG GCTCACGGGGTTTGATGTGCCGAGCATGCATTCAATGTATGTAGATAAACCTATGAGCGGGCACAACCTTATGCAGGCCA TAGCGAGAGTGAATCGGGTTTTTAAAGAAAAACAAGGCGGACTCGTTGTTGATTATATTGGTATTGCAGAAAACTTGAAA AATGCGCTTGCACAATATACAGAAAGCGATAAGAAAACAACCGGAGTAGATACTGAGGTGGCATCTCAGGTTCTTTTGGA GAAATACGACTTAATAAAGGAACTGCTTCACGGGCATAGTTACGAAAAATTTTTCACGGGCAGGCAGAGTGAGAAGATGC AAGCCATTACGGAAACAATGGATTTTATTATTGGACTTCGAGAAGATAGAAAGAACGATTATATTAATCTAGTGACGGAA ATGGCCCGGGCGTATTCGCTGTGTGCTACAACAGATACTGCTGAAACACTTAACGTTGAAGTAGGATTTCACAAAGCCGT AAGGGCATGTCTACACAAAATAATGAGTGACGGGAGCAAAAAGAAAACCACATCCCAGCTAGATAACGAACTTAACCAGT TGATTTCAAAGGCGATTTCCTCTAATGAAGTGGTTGATATTTTAAGTTCTGTTGGTCTCTCGAAACCCAATATTGCTATT CTTTCAGATGAATTCTTAGAGGAAGTAAAAGGAATGCGGCAGAAAAACTTGGCAGTGGAGTTGTTGAATCGATTGCTCAA AGGTAGCATCAAAAACTTTTCAAGACGCAACCTTGTTCAATCGAAGAGGTTCTCTGAAATGCTTGAAGCCTCCATAAGAA AATATCAGAACAGAACTATTGAAACCACTCAGGTAATTATGGAATTGATTGAGCTTGCCAAAGAAATTAGTGGCGCGGAA AAACGTGGAGAGAGCACGGGGCTTACCTCGGACGAATTAGCTTTTTATGATGCGCTGGCTGATAATGAGTCGGCCCGGGA TGTTATGGGAGACGAGATCTTAATGCAGATAGCAAAAGACCTGACGCTATCTATTAGAAGGAATATCAGCGTAGACTGGG CTATTCGTGAAAATGTACAGGCAAAGATGAAAATGGACATCAAGCGGCTGTTGAAGCGCTATAACTACCCTCCGGATAAA ACTCCCCAAGCAGTGGATACTGTGATAGCGCAGGCAAAACTCATGTGCCAAAAAGAAGTTGCATACGGAAGCTAA Protein sequence : MAFCECHLEEAALEWFEELGYEVVFAPDIAPEGTYPERTYYSDVVLTERLKEALARINPDLPDDALEDGFRQIMFPQSPS LIMNNKTFQKMITDGIDVQVKQEDGGYRTEKAYIFDLEAPSNNDFLVANQFTVVEHDKEKRPDIVVFVNGIPLVVIELKN ASDENVDITDAFNQLQTYKKTIPSLFTYNSFTVISDGVNARAGTLTSNEDRFMAWRTIDGDDVAPLCIPQLEVLIKGMFL KDRFLDIIRHFVLFQSDGKEIKKILAGYHQYHAVNKALQSTQRATMEQGDRRVGVIWHTQGSGKSLSMVFYAGKLVIDEE LENPTIVVITDRNDLDDQLFSTFLKSEELLRNTPVQAQDRVHLRELLNNRTSGGIIFTTIQKFAPFTNETNGEVIDFNRW GRVAENSSPYTANTMLTDRRNVVVIADEAHRSQYGFGAEIVMGKTEADVKYGYAKYMRDSLPNASYIGFTGTPVELTDKN TRVVFGDYIDIYDMTRAVEDGTTVKIFYESRIAKLDLPEEMKPQIDSEYEEITEYQEYSQKERLKSKWARLEAIVGTEQR IKQIAKDIVEHFEKRDLAQENEGGKGMIVAMSRRIAIDLYKEIVALRPDWHSDDLMSGKIKVVITGSSSDPSDWQAFIGS KADRETLAKRMKDRNDELKLVIVRDMWLTGFDVPSMHSMYVDKPMSGHNLMQAIARVNRVFKEKQGGLVVDYIGIAENLK NALAQYTESDKKTTGVDTEVASQVLLEKYDLIKELLHGHSYEKFFTGRQSEKMQAITETMDFIIGLREDRKNDYINLVTE MARAYSLCATTDTAETLNVEVGFHKAVRACLHKIMSDGSKKKTTSQLDNELNQLISKAISSNEVVDILSSVGLSKPNIAI LSDEFLEEVKGMRQKNLAVELLNRLLKGSIKNFSRRNLVQSKRFSEMLEASIRKYQNRTIETTQVIMELIELAKEISGAE KRGESTGLTSDELAFYDALADNESARDVMGDEILMQIAKDLTLSIRRNISVDWAIRENVQAKMKMDIKRLLKRYNYPPDK TPQAVDTVIAQAKLMCQKEVAYGS |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hsdR | BAD24840.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-V SCCmec | Protein | 0.0 | 53 |
| hsdR | BAH57699.1 | type I restriction-modification system endonuclease homologue | Not tested | Type-VII SCCmec | Protein | 0.0 | 53 |
| hsdR | YP_251977.1 | type I restriction-modification system restriction subunit | Not tested | SCCmec | Protein | 0.0 | 53 |
| api52 | CAF28526.1 | hsdr-like Type I restriction enzyme | Not tested | YAPI | Protein | 0.0 | 47 |
