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Name : Amico_1715 (Amico_1715) Accession : YP_003554554.1 Strain : Aminobacterium colombiense DSM 12261 Genome accession: NC_014011 Putative virulence/resistance : Virulence Product : polysaccharide biosynthesis protein CapD Function : - COG functional category : M : Cell wall/membrane/envelope biogenesis COG ID : COG1086 EC number : - Position : 1763819 - 1765678 bp Length : 1860 bp Strand : + Note : PFAM: polysaccharide biosynthesis protein CapD; 3- beta hydroxysteroid dehydrogenase/isomerase; short-chain dehydrogenase/reductase SDR; dTDP-4-dehydrorhamnose reductase; NAD-dependent epimerase/dehydratase; KEGG: gme:Gmet_1338 polysaccharide biosynthesis DNA sequence : ATGACTAAAAGCAAACAGATGCTTCTTATAAAATTAGGTATCGACATTTTGCTCGGCGCACTTGCGGCCTATTGCGCTTT CGCTCTTCGCATTGGCTTGCCTCTTGGCAAATACGCCCCCCGTGCCTTTACCTACACATATATAAGTGTTTTTATCAAAG TGGCCCTCAATTATTACTTCAACCTCCACCGTCAGTCATGGCGCACAGTAGGCACCAGGGATGCCCTTGCCCTCGCTAAA TCTACTGTTATTTTCGCCTTAATCGCCTCTTCCATCGCCTTTATGCTGGGACACAACTACAATATCCCTCGCAGCATTCC CCTTATCGACGCTCTTGTCTACGCCGTCTTTATGGGATCAAGCCGATTCGCCAGCAGAATAATCTTTGAAGAAATTGTTG GCCGCAAAACAGGCATAAACAAAAAAAGAACCCTGATCGTAGGGGCTGGCGATGCCGGAACCATGATCGCCCGTGAAATA TTCCGCCATCCTGAGTCTGGGCTGGTTCCTGTTGGATTTCTCGACGATGACCCTTCGAAAAAAGAAACCCGCTTTTTAGG CCTCGATGTATTTGGCCCCATTGGCGACCTGAGACAAGTGGTTCGAGGACACAGTATTGAAGAAGTTATCATAGCCATGC CTTCTGCCCCTGGAACCACCGTAAGGCGCATTGTTGAACTTGCGAAGAAAGCCAAAGTACAATACCGCATTATTCCCGGC ATCTATGAAGTAATCAGCGGAAAAGTTTCAATATCACTGCTTCGCCCTGTAGACGTGGAAGACCTGCTTCGCCGCGAACC CGTGAGGCTTGATATCGACTCAATAGCCGGCTACCTCTCTAGCAAAGTAGTTCTTGTAACGGGGGCCGGCGGATCCATCG GCTCTGAGATATGCAGGCAAATATGTCATTTTTCACCTAAGCTTCTCATCCTCCTCGGTCGAGGAGAAAACAGCCTCTTT AACATTGAAAGGGAGATGAAAGCAAATTATTCTCATATTCCCTATGTTACGATGGTAGCAGACGTGCGAAACATCCATAA AATCGAGCATATTTTTGAACAATACAGGCCTGAAGTTGTGTTCCACGCGGCGGCTCATAAACATGTGCCCATGATGGAAA CCAACCCTGACGAAGCCATTTTAAACAACATTGGAGGCACACAAAACCTTGTAAAAAATGCCTTGCGCTTTAACACCAGT TACTTCGTCAACATATCCACAGACAAGGCGGTAAACCCCACATCTATTATGGGAGCCTCTAAGCGGGTGGCCGAAATGGT GGTGCGAAAAGCTGCCATAGAAGCCAAAGAAGGGCAACACTTTATATCTGTACGTTTCGGTAACGTTCTTGGTTCTCGCG GCAGCGTTGTTCCCATCTTCAGAGAGCAGATCAGAAAGGGTGGCCCTATAACAATCACCCACCCTGAAATGACACGATAT TTTATGACAATACCCGAAGCGGCACAGCTTGTTTTACAAGCGGGAGGAATGAACAAAAACGGACAGGTTTTCGTTCTCGA TATGGGCGAACCTGTTAAAATCGTTGATTTAGCTAAAGACATTATTCGCCTTTCAGGATTTGAACCTGAAGAAATCGAAA TTGTCTATACTGGCGTACGCCCTGGTGAAAAGTTGTATGAAGAGCTTCTTACAGCGGAAGAAGGCACAACAGCAACTCAT CATAAAAAAATATATGAGGCAAAAAGCAATGATTTGCCAGCGGACCTGGATGCAAAACTTGCCGGCCTTTTTGAAACCGC AGCCAGCGGCAACAATGAAGACATATGCAAAAGGCTATTTGAAGTTGTACCCCAATTCAAGTCTAAAGAAATAGAAGGTG CTGTTCATGAACAAATATGA Protein sequence : MTKSKQMLLIKLGIDILLGALAAYCAFALRIGLPLGKYAPRAFTYTYISVFIKVALNYYFNLHRQSWRTVGTRDALALAK STVIFALIASSIAFMLGHNYNIPRSIPLIDALVYAVFMGSSRFASRIIFEEIVGRKTGINKKRTLIVGAGDAGTMIAREI FRHPESGLVPVGFLDDDPSKKETRFLGLDVFGPIGDLRQVVRGHSIEEVIIAMPSAPGTTVRRIVELAKKAKVQYRIIPG IYEVISGKVSISLLRPVDVEDLLRREPVRLDIDSIAGYLSSKVVLVTGAGGSIGSEICRQICHFSPKLLILLGRGENSLF NIEREMKANYSHIPYVTMVADVRNIHKIEHIFEQYRPEVVFHAAAHKHVPMMETNPDEAILNNIGGTQNLVKNALRFNTS YFVNISTDKAVNPTSIMGASKRVAEMVVRKAAIEAKEGQHFISVRFGNVLGSRGSVVPIFREQIRKGGPITITHPEMTRY FMTIPEAAQLVLQAGGMNKNGQVFVLDMGEPVKIVDLAKDIIRLSGFEPEEIEIVYTGVRPGEKLYEELLTAEEGTTATH HKKIYEAKSNDLPADLDAKLAGLFETAASGNNEDICKRLFEVVPQFKSKEIEGAVHEQI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cap1D | AAA64643.1 | type 1 capsule synthesis gene | Virulence | SCCcap1 | Protein | 2e-91 | 48 |
| SSP0063 | YP_300153.1 | capsular polysaccharide biosynthesis protein | Not tested | SCC15305cap | Protein | 3e-95 | 45 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| Amico_1715 | YP_003554554.1 | polysaccharide biosynthesis protein CapD | VFG1300 | Protein | 1e-96 | 45 |
| Amico_1715 | YP_003554554.1 | polysaccharide biosynthesis protein CapD | VFG0029 | Protein | 2e-73 | 44 |
