Gene Information

Name : Amico_1340 (Amico_1340)
Accession : YP_003554181.1
Strain : Aminobacterium colombiense DSM 12261
Genome accession: NC_014011
Putative virulence/resistance : Virulence
Product : TRAP dicarboxylate transporter subunit DctM
Function : -
COG functional category : G : Carbohydrate transport and metabolism
COG ID : COG1593
EC number : -
Position : 1369461 - 1370750 bp
Length : 1290 bp
Strand : -
Note : KEGG: dde:Dde_1550 TRAP dicarboxylate transporter- DctM subunit; TIGRFAM: TRAP dicarboxylate transporter, DctM subunit; PFAM: TRAP C4-dicarboxylate transport system permease DctM subunit

DNA sequence : 
ATGAGTTTGATAATGCTGGGTTCTTTCTTCATATTAATGTTTTCAGGGATGCCATTGTATCTATCCCTGGTTACTACAGC
ACTTACCGGCATAATAGCCTTAGGAGACTGGTCTCTGATCCGAGTGCTTGCACAACAATTCTATGGAGGCATGGACTCCT
TTGCTTTAATGGCTATACCATTCTTTGTCCTTACAGGCATTCTGATGAATAAATCAGGATTAACGGATCGTCTGCTGGAA
TTTAGCCGCCTGCTCGTGGGGTCTGTTCGTGGAGGGTTAGGGTACGTGAATGTTGTAGCAGGAATAGTTCTGGCAGGCGT
TAACGGTTCAGCAGCAGCTGATGCCTCCGCGCTAGGAACGCTTCTTATTCCGGCTATGGTCAAGGATGGTTTCTCACCTC
CATATGCTGCGGGGTTGACAGCTGGCAGCTCGCTCATAGGTCCGATTATCCCGCCGAGCGTTTTCATGATTATCTACGCC
TCAATGACGAATACTTCCATTGGCGGGCTTTTTGCGGCAGGTGTTCTCCCTGGGCTTCTTTTGGGTGGTGCCTTTATGGT
TATGAACTATTTCTACTCTCGCAAGAACAATATGCCAATACTAGACTCTAAGGCTATTCGCGCAGAGGCAGGGAAAACTC
TCAAAAGATCCTTTAGCGCCATTTTAGCCCCTGTGATTATTATCGGTGGAATAGTGACCGGCATAGTGACGCCCACCGAG
TCTGGTGCACTGGCTGTCGCATATTGTCTTATTGTAGGTGTCTTCCTTACACGGGGATTAACCTTAAAGGGCATTTGGGA
ATCGCTTTATGAAACAGCCCGATTAACCAGCTCCATCTTTCTCATTATGGGCGCCGCTACTATTATAGGATGGCTCCTCA
AATGGGATCAGGTGCCCCAGCGCTTTGCCATGTTCCTTACCCAGAGCGGGCTTGTTCAGAGTCCTTTTCTGCTAATGATC
GTGTTCTCAGCCATAATCTTCCCCATCGGCATGTTCATGGAGGAAGTTTCCACATTGTCGCTGCTGACACCAATCTTCGC
TCCGCTGGCGATAAAGGCTGGAATAGATCCCCTTCATTTTGGAGTGGTGATGACACTCAATGTAACGATAGCATTGATAA
CGCCTCCCATGGGAGCGTGCAATTATATTGTTGCCGCTATTGGTCGCGTTAAACTCTCGGATGTGTTTATTCACATCTGG
CCCTTCATCGGCGTTTCCATGCTTGTGTTGTTAATAATCATCGCATTTCCGCCGATTACGACCTTCATACCGCGGCTGCT
TGGTCTTTAG

Protein sequence : 
MSLIMLGSFFILMFSGMPLYLSLVTTALTGIIALGDWSLIRVLAQQFYGGMDSFALMAIPFFVLTGILMNKSGLTDRLLE
FSRLLVGSVRGGLGYVNVVAGIVLAGVNGSAAADASALGTLLIPAMVKDGFSPPYAAGLTAGSSLIGPIIPPSVFMIIYA
SMTNTSIGGLFAAGVLPGLLLGGAFMVMNYFYSRKNNMPILDSKAIRAEAGKTLKRSFSAILAPVIIIGGIVTGIVTPTE
SGALAVAYCLIVGVFLTRGLTLKGIWESLYETARLTSSIFLIMGAATIIGWLLKWDQVPQRFAMFLTQSGLVQSPFLLMI
VFSAIIFPIGMFMEEVSTLSLLTPIFAPLAIKAGIDPLHFGVVMTLNVTIALITPPMGACNYIVAAIGRVKLSDVFIHIW
PFIGVSMLVLLIIIAFPPITTFIPRLLGL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
VPI2_0025c ACA01842.1 TRAP dicarboxylate transporter DctM subunit Not tested VPI-2 Protein 1e-41 44
VC1777 NP_231412.1 hypothetical protein Not tested VPI-2 Protein 2e-41 44
VC0395_A1375 YP_001217318.1 hypothetical protein Not tested VPI-2 Protein 2e-41 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Amico_1340 YP_003554181.1 TRAP dicarboxylate transporter subunit DctM VFG1110 Protein 8e-42 44