Gene Information

Name : SAR116_0829 (SAR116_0829)
Accession : YP_003551156.1
Strain : Candidatus Puniceispirillum marinum IMCC1322
Genome accession: NC_014010
Putative virulence/resistance : Virulence
Product : ATPase
Function : -
COG functional category : N : Cell motility
COG ID : COG1157
EC number : 3.6.3.15
Position : 872975 - 874303 bp
Length : 1329 bp
Strand : -
Note : -

DNA sequence :
ATGAGTATCTTGAGCGACGCAATCATGACTGATTTGAACGCTGTGAAGTTGGATCAACCTATCTCATTATATGGACATGT
CAGTCGTTATGATGGCCAGATTATTGAGTGCGATGGGTTTCCAGCAAATATAGGATCAATTTGTGAGGTGAAAACCGACA
ATGAGACGCCTGCAATGGCAGAAGTGATTGGTTTCAATAACGGAAATAATCTGCTTTCGATTTATGATTATGGTGCGCGT
ATCCTTGTTGGTGCCCGCGTGTCACTTGTTGATGATGGCGCGTATATACCTGTTGGCGAAGGCCTTTTGGGACGGGTAAC
CGATGCGCTTGGTGTGCCGCTTGATAATCGCCCGCTTCCCCCATTAGAGGGTCAGTGGCCATTGATGGGAAAAGAACTGA
ACCCTCTGCAACGTAAACCCGTTGATAAACCGTTGGATGTTGGCGTGCGCATTATCAATTCGGTCCTTTCGGTAGGCCAA
GGCCAACGTGTTGGCATTATCGCAGGATCGGGTGTTGGAAAATCAGTTTTGCTGGGAATGATGAGCCGGTTTACTGATGC
TGATATTGTGGTCGTTGGTATGATTGGAGAACGTGGCCGAGAAGTTGGCAGCTTTGTTAACTACATCCTTGGCAGTGAGA
GCCGTGATCGCGCCGCTGTTGTGGCGGTGCCAGCTGATAGATCTCCGTTATTGCGGATACGTGGTGCCGAACGCGCAACA
GCCATTGCTGAATATTTTCGCGATAAAGGTAAAAATGTTCTACTCATTATGGACTCTCTGACGCGTGTGGCTCATGCGCG
CCGTGAAATCGGTCTTGCTCTTGGTGAACAGCCGACATCAAAGGGATATCCACCATCAGTTGTATCAATGATACCAAGAC
TTATTGAGCGCTCGGGTACCGGTGTCGAAGGGCAGGGGTCAATTACCGCAATTTATACCGTGCTTGCTGATGGTGATGAT
GCAAATGATCCCGTTGTTGATACAGCACGTGCTATTTTGGATGGTCATATTTTGCTCTCGCGTCAGCAAGCGCAAATGGG
CATTTATCCTGCTATTGATGTTACAACATCGGTTAGCCGGGTTATGAATGACATTACTGATGCAGATCAGCAAGCTTCCG
CCGCGCGCTTTCGGCGTCTGGTTTCCCTATATATGGAAAACCGTGATCTGATCCTTATGGGAGGATATACCCCTGGTCAA
GACCCGGATCTCGATCTTGCCGTTGAATTATGGCCAACTTTGACCAAACATATACAACAGCCGGAAGCTGAAAAAGCAAA
TTTTGCAATCAGTCGTGATGCACTTATTGGCTTGATGAGAAATGCGTAA

Protein sequence :
MSILSDAIMTDLNAVKLDQPISLYGHVSRYDGQIIECDGFPANIGSICEVKTDNETPAMAEVIGFNNGNNLLSIYDYGAR
ILVGARVSLVDDGAYIPVGEGLLGRVTDALGVPLDNRPLPPLEGQWPLMGKELNPLQRKPVDKPLDVGVRIINSVLSVGQ
GQRVGIIAGSGVGKSVLLGMMSRFTDADIVVVGMIGERGREVGSFVNYILGSESRDRAAVVAVPADRSPLLRIRGAERAT
AIAEYFRDKGKNVLLIMDSLTRVAHARREIGLALGEQPTSKGYPPSVVSMIPRLIERSGTGVEGQGSITAIYTVLADGDD
ANDPVVDTARAILDGHILLSRQQAQMGIYPAIDVTTSVSRVMNDITDADQQASAARFRRLVSLYMENRDLILMGGYTPGQ
DPDLDLAVELWPTLTKHIQQPEAEKANFAISRDALIGLMRNA

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ssaN NP_460380.1 type III secretion system ATPase Virulence SPI-2 Protein 1e-65 46
ssaN CAA70537.1 secretion system apparatus Virulence SPI-2 Protein 7e-66 46
ssaN YP_216423.1 type III secretion system ATPase Virulence SPI-2 Protein 3e-66 46
lscN AAO18044.1 LscN Virulence TTSS locus Protein 1e-65 46
ssaN NP_456113.1 putative type III secretion ATP synthase Virulence SPI-2 Protein 4e-65 45
ssaN NP_805086.1 type III secretion system ATPase Virulence SPI-2 Protein 4e-65 45
YPO0267 YP_002345348.1 type III secretion system ATPase Virulence Not named Protein 3e-68 45
XC_3006 YP_244074.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-70 42
hrcN NP_636610.1 type III secretion system ATPase Virulence Hrp PAI Protein 1e-70 42
hrcN AAG33879.1 HrcN Virulence Hrp PAI Protein 2e-61 42
hrcN AAR25633.1 type III secretion cytoplasmic ATPase HrcN Not tested Not named Protein 2e-61 42
escN AAC31513.1 L0034 Virulence LEE Protein 1e-66 42
escN NP_290268.1 hypothetical protein Virulence LEE Protein 2e-66 42
unnamed ACU09458.1 type III secretion apparatus H+-transporting two-sector ATPase Virulence LEE Protein 1e-66 42
ECs4568 NP_312595.1 EscN Virulence LEE Protein 2e-66 42
escN AAC38383.1 EscN Virulence LEE Protein 8e-67 42
hrcN AAT96339.1 HrcN Virulence S-PAI Protein 2e-58 42
hrcN AAT96299.1 HrcN Virulence S-PAI Protein 2e-58 42
hrcN AAT96258.1 HrcN Virulence S-PAI Protein 1e-58 42
hrcN NP_640767.1 type III secretion system ATPase Virulence Hrp PAI Protein 2e-71 41
hrcN AAP34339.1 HrcN Virulence Hrp PAI Protein 2e-72 41
hrcN YP_198730.1 type III secretion system ATPase Virulence Hrp PAI Protein 6e-71 41
hrpB6 AAF61281.1 HrpB6 Virulence Hrp PAI Protein 5e-71 41
hrcN YP_362163.1 type III secretion system ATPase Virulence Hrp PAI Protein 8e-70 41
hrpB6 AAB08461.1 HrpB6 Virulence Hrp PAI Protein 6e-70 41
hrpB6 BAB07852.1 HrpB6 Virulence Hrp PAI Protein 5e-71 41
hrcN NP_791227.1 type III secretion cytoplasmic ATPase HrcN Virulence Hrp PAI Protein 2e-62 41
hrcN AAT96141.1 HrcN Virulence T-PAI Protein 3e-62 41
hrcN AAT96195.1 HrcN Virulence T-PAI Protein 1e-62 41
escN AFO66300.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 7e-68 41
escN AFO66415.1 putative LEE-encoded type III secretion system ATPase Virulence SESS LEE Protein 7e-68 41
ECs3730 NP_311757.1 ATP synthase SpaL Not tested LIM Protein 1e-59 41
hrcN ABA47275.1 HrcN Virulence S-PAI Protein 7e-63 41
escN AAK26715.1 EscN Virulence LEE Protein 3e-65 41
escN AAL57542.1 EscN Virulence LEE Protein 3e-65 41
escN YP_003223475.1 translocator EscN Virulence LEE Protein 3e-65 41
escN CAI43874.1 EscN protein Virulence LEE Protein 2e-65 41
escN YP_003232153.1 T3SS structure protein EscN Virulence LEE Protein 2e-65 41
escN YP_003236088.1 translocator EscN Virulence LEE Protein 2e-65 41
escN CAC81862.1 EscN protein Virulence LEE II Protein 1e-65 41
hrcN AAB06001.1 HrcN Virulence Hrp PAI Protein 7e-59 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SAR116_0829 YP_003551156.1 ATPase VFG1254 Protein 2e-88 50
SAR116_0829 YP_003551156.1 ATPase VFG2499 Protein 2e-83 50
SAR116_0829 YP_003551156.1 ATPase VFG2331 Protein 6e-84 49
SAR116_0829 YP_003551156.1 ATPase VFG0515 Protein 4e-66 46
SAR116_0829 YP_003551156.1 ATPase VFG0390 Protein 1e-67 46
SAR116_0829 YP_003551156.1 ATPase VFG0192 Protein 3e-70 43
SAR116_0829 YP_003551156.1 ATPase VFG0048 Protein 8e-69 43
SAR116_0829 YP_003551156.1 ATPase VFG2144 Protein 1e-67 42
SAR116_0829 YP_003551156.1 ATPase VFG0730 Protein 4e-67 42
SAR116_0829 YP_003551156.1 ATPase VFG0812 Protein 8e-67 42
SAR116_0829 YP_003551156.1 ATPase VFG1008 Protein 6e-56 42
SAR116_0829 YP_003551156.1 ATPase VFG2459 Protein 6e-54 41