Gene Information

Name : SAR116_0822 (SAR116_0822)
Accession : YP_003551149.1
Strain : Candidatus Puniceispirillum marinum IMCC1322
Genome accession: NC_014010
Putative virulence/resistance : Virulence
Product : flagellar biosynthetic protein FliP
Function : -
COG functional category : N : Cell motility
COG ID : COG1338
EC number : 3.1.1.3
Position : 867184 - 867969 bp
Length : 786 bp
Strand : -
Note : -

DNA sequence :

ATGACCCGTATTGTGCGCATCCTCATAACCTCTTTGCCTATTGCCATTCTTTCTCTTTGTGGTGTGATGAGTGGTGCCGA
AGCACAGCTCATTGGTGATACGCCACCGGGATTGCCAGCATTCAATGTAACCGGCAGCGAAGACGGTACTTCAACCTATT
CATTGTCATTACAGATATTGGCATTGATGACGGCTTTGACAGTGTTACCGTCACTTGTTCTAGGCATGACATCCTTCACC
CGTATCATCATTGTTTTATCAATTTTACGTCAGGCGATGGGCACACAGCAAACACCACCTAATCAGGTGCTGGTTGCGAT
TGCCCTGTTTTTGACCTTTTTCATTATGGCACCAACATTCACGCAGCTGAATGATATGGCGCTTTCTCCCTATATGGAAG
GGACGATGCCGATGGAAACAGCGCTTTCAGACGGCACCAATATTATGAAGGATTTTCTGGTACAAAATACGCGTGTGACT
GATCTGGTCATGTTCACTGAGATGGCAGGTGACACAACTTATGAAGATCCAAAAGATGTGCCGCTAACCGTCTTACTACC
AGCTTTCATCACATCCGAATTGAAAACAGCATTTCAGATTGGCTTTTTGTTATTCTTGCCATTTCTGGTCATCGACATGG
TGATTGCGTCTATTTTGATGTCACTAGGTATGATGATGCTGAGCCCGATGCTTGTTGCATTACCTTTTAAACTTCTGCTG
TTTGTTCTGGTCGATGGCTGGGCGATGACAGTTGGCTCACTTGTAGCCACCTACGCCGGATCATGA

Protein sequence :

MTRIVRILITSLPIAILSLCGVMSGAEAQLIGDTPPGLPAFNVTGSEDGTSTYSLSLQILALMTALTVLPSLVLGMTSFT
RIIIVLSILRQAMGTQQTPPNQVLVAIALFLTFFIMAPTFTQLNDMALSPYMEGTMPMETALSDGTNIMKDFLVQNTRVT
DLVMFTEMAGDTTYEDPKDVPLTVLLPAFITSELKTAFQIGFLLFLPFLVIDMVIASILMSLGMMMLSPMLVALPFKLLL
FVLVDGWAMTVGSLVATYAGS

• Homologs from PAI DB

Gene	GenBank Accn	Product	Virulance or Resistance	PAI or REI	Alignment Type	E-val	Identity
ECs4583	NP_312610.1	type III secretion system protein	Virulence	LEE	Protein	1e-22	44
escR	AAC31528.1	L0049	Virulence	LEE	Protein	2e-23	44
escR	ACU09473.1	type III secretion system protein EscR	Virulence	LEE	Protein	2e-23	44
escR	YP_003236103.1	T3SS structure protein EscR	Virulence	LEE	Protein	3e-23	44
escR	NP_290283.1	type III secretion system protein	Virulence	LEE	Protein	3e-23	44
escR	CAI43889.1	EscR protein	Virulence	LEE	Protein	3e-23	43
escR	YP_003223490.1	T3SS structure protein EscR	Virulence	LEE	Protein	3e-23	43
escR	YP_003232138.1	type III secretion system protein	Virulence	LEE	Protein	3e-23	43
escR	AAK26700.1	EscR	Virulence	LEE	Protein	3e-23	43
escR	AAL57527.1	EscR	Virulence	LEE	Protein	3e-23	43
escR	CAC81847.1	EscR protein	Virulence	LEE II	Protein	3e-23	43
escR	AFO66400.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	9e-23	43
escR	AFO66317.1	putative LEE-encoded type III secretion system factor	Virulence	SESS LEE	Protein	9e-23	43
YPO0270	YP_002345352.1	type III secretion system protein	Virulence	Not named	Protein	2e-27	42
escR	AAC38369.1	EscR	Virulence	LEE	Protein	4e-23	42
hrcR	AAT96262.1	HrcR	Virulence	S-PAI	Protein	8e-23	41
hrcR	AAT96303.1	HrcR	Virulence	S-PAI	Protein	8e-23	41
hrcR	AAT96343.1	HrcR	Virulence	S-PAI	Protein	8e-23	41
unnamed	AAL06354.1	EscR	Virulence	LEE	Protein	1e-23	41

• Homologs from VFDB (virulence genes)

Gene	GenBank Accn	Product	ID of source DB	Alignment Type	E-val	Identity
SAR116_0822	YP_003551149.1	flagellar biosynthetic protein FliP	VFG2494	Protein	2e-54	57
SAR116_0822	YP_003551149.1	flagellar biosynthetic protein FliP	VFG1259	Protein	2e-54	54
SAR116_0822	YP_003551149.1	flagellar biosynthetic protein FliP	VFG2016	Protein	8e-55	53
SAR116_0822	YP_003551149.1	flagellar biosynthetic protein FliP	VFG2338	Protein	9e-49	50
SAR116_0822	YP_003551149.1	flagellar biosynthetic protein FliP	VFG0827	Protein	1e-23	44
SAR116_0822	YP_003551149.1	flagellar biosynthetic protein FliP	VFG0715	Protein	2e-23	42
SAR116_0822	YP_003551149.1	flagellar biosynthetic protein FliP	VFG0394	Protein	3e-26	41
SAR116_0822	YP_003551149.1	flagellar biosynthetic protein FliP	VFG0188	Protein	1e-26	41