Gene Information

Name : SAR116_1965 (SAR116_1965)
Accession : YP_003552292.1
Strain : Candidatus Puniceispirillum marinum IMCC1322
Genome accession: NC_014010
Putative virulence/resistance : Virulence
Product : polysaccharide biosynthesis protein CapD
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG1086
EC number : 1.1.1.-
Position : 2170150 - 2172072 bp
Length : 1923 bp
Strand : +
Note : -

DNA sequence : 
ATGGAAAATAACCTTCGACTTCATATTCTGGCTTTGCCACGCTTTACCAAGCGGCTTGTCGTCATGCTTGTTGATGCGCT
TTTGGCTGTCATGTCAGTATGGATAGCTTTCTATTTGCGCGTGGGAGAATTTCTGTCGTTATTCACCCAAAGTGCCGAAC
ATTTTCCTCCTAGCGCTGTTATCGGTGCCGTATGTTTGTCTATTCCAATTTTCATGGCTATGGGGCTATATCGAACAGTT
TTCCGTTATTCAGGTGGATCTGCGTTGATTGCTGTTGGGCAAGCCTGCGCTTTTTATAGCTTGGTATATATAACAATCTT
CACTGCAATAGGTATCAGCGGTGTCCCTAGAACTGTTGGGATAATTCAGCCATTAATATTGTTTATTCTGATAGCCGGTT
CGCGCGTGAGCGCGCGTTTATGGCTTGGTGGATTGTATGATGAACAATTAAAGCAAAATAAAGTTAAGCGTTCTCTGATT
TATGGTGCGGGGGTAGCCGGACGCGAGTTGGCAGCGGCTCTTGCGCATAATGTTGAGATTAAGATCGTAGGCTTTCTGGA
TGATGACAAAAGTTTACATGGACGTAAAATACGCGGCCTGAATGTATATGACCCCAACACTATCAGTAACATCAGCAAAA
AAAAGAATATAAGCGAGGTTATGCTTGCAATGCCGAGTGTTGGCCGGCAAAGGCGTAATAAGATTTTATCTAAACTTCGT
GGAGCTAATCTTGCGGTGCGGACGCTTCCAAGTTACTCGGATCTGGCTCAAGGGCGCGTAACAGTAAATGACATCCGGGA
ACTGTCTATTGATGACATTCTAGGCCGTGATATTGTCACGCCAGACCCCGAATTAATGAGTGCTGATATTACAGATAAAG
TGGTCTTGATAACAGGCGCTGGTGGTTCGATTGGTGGAGAATTGTGTAAACAAATAATCAAGCAAAAACCATCAAAGCTT
TTGCTTTTTGAACAAAGTGAATTTGCGCTTTATTCTATTTTGGGAAGTCTTGAAACAGCACTTCAAGAGAATATTTCCGA
TGCTAGCTGTGCGCTAGTGCCAATTCTTGGATCTGTCACTGACAAAGGACTATTGGAAACAACATTCAAAGAATATCAAC
CGCAGACAATATATCATGCCGCGGCTTATAAGCATGTGCCGCTTGTAGAGAGTAACCCACTTGTGGGCATTCAGAATAAC
GTATTTGGTACTTTACTTTGTGCCGAAGCTGCTATTGACGCTGGTGTCAAAAAATTTGTCCTGATTAGCACTGACAAGGC
AGTCCGCCCAACTAATGTAATGGGCGCGAGCAAACGTATCGCCGAAATGATTTTACAGGCGCTTGCAGAAGAACAAGTCA
CGACAACATTTGCCATGGTTCGTTTTGGAAATGTTCTCGATTCTTCTGGGTCTGTTGTACCGCTATTCCGCGAACAGATA
AAAGCAGGTGGTCCAGTAACAGTGACGCATAAGGATGTAACCCGCTACTTCATGACGATATCCGAAGCGGCACAACTGGT
TATTCAGGCTGGTGCGATGACTCAAACCATATCATCAAAAAAAAGTGCACCTCTATATTTATTGGATATGGGCTCACCGA
TAAAAATTTATGATCTGGCGAAGCGAATGATAGAATTGTCAGGGTTGAGTCTGATTTCTGACTCAATCGCAGATGGTGAT
ATAGAAATAAATTTTATAGGTTTGAGATCAGGTGAAAAACTTTATGAGGAATTACTTATTGGTGACTCAGTAATGAGTAC
ATCACATCCAAAAGTTAAGGTTGCCAATGAAGTGTTTTTGAGTTGGGGTACATTACGGGGTCATCTTGAACAACTTGAAA
CGTCGGTTGTTAACAGTGATCTCGATTTGCTTCATGCTATATTGGTTGCATTAGTGTCAGGGTATCAACCCAAATCAAAT
TAA

Protein sequence : 
MENNLRLHILALPRFTKRLVVMLVDALLAVMSVWIAFYLRVGEFLSLFTQSAEHFPPSAVIGAVCLSIPIFMAMGLYRTV
FRYSGGSALIAVGQACAFYSLVYITIFTAIGISGVPRTVGIIQPLILFILIAGSRVSARLWLGGLYDEQLKQNKVKRSLI
YGAGVAGRELAAALAHNVEIKIVGFLDDDKSLHGRKIRGLNVYDPNTISNISKKKNISEVMLAMPSVGRQRRNKILSKLR
GANLAVRTLPSYSDLAQGRVTVNDIRELSIDDILGRDIVTPDPELMSADITDKVVLITGAGGSIGGELCKQIIKQKPSKL
LLFEQSEFALYSILGSLETALQENISDASCALVPILGSVTDKGLLETTFKEYQPQTIYHAAAYKHVPLVESNPLVGIQNN
VFGTLLCAEAAIDAGVKKFVLISTDKAVRPTNVMGASKRIAEMILQALAEEQVTTTFAMVRFGNVLDSSGSVVPLFREQI
KAGGPVTVTHKDVTRYFMTISEAAQLVIQAGAMTQTISSKKSAPLYLLDMGSPIKIYDLAKRMIELSGLSLISDSIADGD
IEINFIGLRSGEKLYEELLIGDSVMSTSHPKVKVANEVFLSWGTLRGHLEQLETSVVNSDLDLLHAILVALVSGYQPKSN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SSP0063 YP_300153.1 capsular polysaccharide biosynthesis protein Not tested SCC15305cap Protein 9e-72 44

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SAR116_1965 YP_003552292.1 polysaccharide biosynthesis protein CapD VFG0029 Protein 1e-100 45
SAR116_1965 YP_003552292.1 polysaccharide biosynthesis protein CapD VFG1300 Protein 1e-72 42