Gene Information

Name : SAR116_1952 (SAR116_1952)
Accession : YP_003552279.1
Strain : Candidatus Puniceispirillum marinum IMCC1322
Genome accession: NC_014010
Putative virulence/resistance : Virulence
Product : UDP-glucose/GDP-mannose dehydrogenase
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG0677
EC number : 1.1.1.-
Position : 2155536 - 2156843 bp
Length : 1308 bp
Strand : +
Note : -

DNA sequence : 
ATGACAATCAGAAACGTCAACGACATTAAACTGGCTGTCATTGGTCTTGGCTATGTTGGCTTGCCACTTGCGGCTGAATT
TGCCAAATACCGTGAAGTTGTTGGTTTTGATATTGATGAAAGCCGGATTGCCGAACTCAAAGATTGTAATGACCGTACCC
GTGAACTAAGTGCCGCCGAACTAAAAGCTACGACAGGCTTACGCATTACGAATGATGCCGATGATCTCAAAGATTGTAAT
TGCTATATCATAACTGTGCCAACGCCGGTTGATGCGGCAAAAAAGCCAGATATGTCAACGCTTTTATCCGCGTCAAAGCT
TGTGGGTTCCTTGTTGAAGGCTGGTGACATTGTTATTTATGAATCAACCGTCTATCCGGGCGCTACAGAAGATGACTGCG
CGCCTATTCTGGCACAGCAATCAGGGCTATTTTACGCCGCCAATGCAGAAGATAATAATGATGATGTTTTTCATCTTGGC
TATAGCCCCGAGCGCATTAATCCGGGCGATAAACAGCACCGCGTCACAGATATTGTCAAAGTCACATCTGGTTCCAGCCC
TAGGATTGCCGATCTAATTGACGATCTTTATGCGGGCATTATTACAGCTGGCACATATAAAGCCGAAAGCATCAGGGTGG
CCGAGGCCGCAAAAGTCATTGAAAATACCCAGCGTGATGTCAATATTGCGCTGATTAATGAGCTTGCTGTCATTTTTGAC
AAGCTGGATATTGATACCGAAGCTGTTTTGAAAGCGGCCGGCACAAAATGGAACTTTCTGCCGTTTCGGCCAGGCCTTGT
TGGGGGACACTGTATAGGTGTTGATCCGTATTATCTGACGCATAAAGCCCTACAGGTGGGTTATAATCCGGAAATTATTC
TGGCGGGACGGCGGCTGAATGACGGGATGAGCCAGCATGTTGCAGACCGACTTGTTCAGGCGATGCAGAATAAAAATATC
AACATTTCTGATGCGCGCGTTCTGGTGCTAGGACTGACGTTCAAAGAAAATTGCCCCGATACACGCAACTCAAAGGTCTT
TGACCTTGTTCAACATCTGGCCGACTACAAATGCGTTGTCGATGTGTATGATCCTTGGGTTATCTTAGGTGACGTGCCGA
CAGGTCTGGCGGGTACATGTATCGAAAAACCTTTGCATGGTGCATATGATGCGATTGTCATTGCCGTTGGCCATAGTCAA
TTTGCCAAGTTAGGCGCACACGCAATCCGATCTTTCGGCAAAGAAAAACATGTTTTATTCGATATGAAGTATCTACTTGA
TGTGAACGAGTCTGATGAGCGTTTATAA

Protein sequence : 
MTIRNVNDIKLAVIGLGYVGLPLAAEFAKYREVVGFDIDESRIAELKDCNDRTRELSAAELKATTGLRITNDADDLKDCN
CYIITVPTPVDAAKKPDMSTLLSASKLVGSLLKAGDIVIYESTVYPGATEDDCAPILAQQSGLFYAANAEDNNDDVFHLG
YSPERINPGDKQHRVTDIVKVTSGSSPRIADLIDDLYAGIITAGTYKAESIRVAEAAKVIENTQRDVNIALINELAVIFD
KLDIDTEAVLKAAGTKWNFLPFRPGLVGGHCIGVDPYYLTHKALQVGYNPEIILAGRRLNDGMSQHVADRLVQAMQNKNI
NISDARVLVLGLTFKENCPDTRNSKVFDLVQHLADYKCVVDVYDPWVILGDVPTGLAGTCIEKPLHGAYDAIVIAVGHSQ
FAKLGAHAIRSFGKEKHVLFDMKYLLDVNESDERL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
tviB NP_458740.1 Vi polysaccharide biosynthesis protein, UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-130 59
tviB NP_807945.1 VI polysaccharide biosynthesis UDP-glucose/GDP-mannose dehydrogenase Virulence SPI-7 Protein 2e-130 59
cap1L AAA64651.1 type 1 capsule synthesis gene Virulence SCCcap1 Protein 9e-95 57

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SAR116_1952 YP_003552279.1 UDP-glucose/GDP-mannose dehydrogenase VFG0431 Protein 9e-131 59