Gene Information

Name : Caka_2748 (Caka_2748)
Accession : YP_003549933.1
Strain : Coraliomargarita akajimensis DSM 45221
Genome accession: NC_014008
Putative virulence/resistance : Virulence
Product : ABC transporter
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG1121
EC number : -
Position : 3332938 - 3333744 bp
Length : 807 bp
Strand : +
Note : KEGG: rba:RB12438 manganese transport system ATP- binding protein; PFAM: ABC transporter related; SMART: AAA ATPase

DNA sequence : 
ATGAATGCGGTATCCAAAGACTTAATACCTGAGGCACCTGCGGAGAGTCAGGATGCGCGCTTACCGTTTTCGGTACGCGA
TTTAACGGTGGCGTATCATCGCAAGCCGGTTGTGTGGGATGTGGATTTGGCCGTTCCGGAGGGCAAGCTGGCGGCGATTG
TCGGGCCCAATGGCGCGGGCAAGAGTACTTTGTTGAAGGCTTGTTTGGATTTGATTCCGCGCTCATCCGGCGAGGTGTCG
ATCTATGGTGAGCCGTATCTGAAACAGCGCCGACGGGTTGGCTATGTGCCGCAGCGCGAGAGTGTCGACTGGGACTTTCC
GGTGAGTGCACTGGATGTGGTCGCCATGGGCACCTATCGTCAGTTGGGCTGGTTTCGTCGGGTGAACAAGCGCTCGCGTG
CACTGGCGATGCAGGCCTTGGAACGGGTCGGCTTGGCGGACTATGCGCATCGGCAGATCAGTCAGTTGTCCGGCGGTCAG
CAGCAACGTACGTTTCTGGCACGTGCGCTGGTACAGGATGCGGATATCTATTTCATGGATGAGCCCTTTGCCGCGGTGGA
TGCAGCGACCGAGCGGGCGATCGTCGACCTGCTGAAAGAGCTGCAGTCGCGGGGGAAGACCTGTCTGGTCGTGCACCATG
ATCTGGCGACCGTGCCGCAGTATTTTGATTGGACCATTCTATTGAATATGCGCGTGGTGGTGAGCGGTCCGACCAAGGAA
GTGTTCACTGAAGAGAATTTGCGTAAGACCTACGGAGGAAAGTTGTCCTTGTTGAGTGAAGCCGCTGAAGAGCTCGCTCG
AACCTAG

Protein sequence : 
MNAVSKDLIPEAPAESQDARLPFSVRDLTVAYHRKPVVWDVDLAVPEGKLAAIVGPNGAGKSTLLKACLDLIPRSSGEVS
IYGEPYLKQRRRVGYVPQRESVDWDFPVSALDVVAMGTYRQLGWFRRVNKRSRALAMQALERVGLADYAHRQISQLSGGQ
QQRTFLARALVQDADIYFMDEPFAAVDAATERAIVDLLKELQSRGKTCLVVHHDLATVPQYFDWTILLNMRVVVSGPTKE
VFTEENLRKTYGGKLSLLSEAAEELART

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
EF0575 NP_814340.1 cationic ABC transporter ATP-binding protein Not tested Not named Protein 2e-49 47
ef0093 AAM75296.1 EF0093 Not tested Not named Protein 1e-49 47
sitB NP_457256.1 Iron transport protein, ATP-binding component Virulence SPI-1 Protein 6e-46 43
sitB NP_806465.1 iron ABC transporter ATP-binding protein Virulence SPI-1 Protein 6e-46 43
sitB YP_217782.1 iron transporter: fur regulated Virulence SPI-1 Protein 1e-46 43
sitB NP_461783.1 ATP-binding protein Virulence SPI-1 Protein 5e-47 43
sitB AAD41066.1 SitB Virulence centisome 63 pathogenicity island Protein 4e-47 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Caka_2748 YP_003549933.1 ABC transporter BAC0400 Protein 1e-72 64
Caka_2748 YP_003549933.1 ABC transporter BAC0350 Protein 2e-47 43
Caka_2748 YP_003549933.1 ABC transporter BAC0440 Protein 2e-44 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
Caka_2748 YP_003549933.1 ABC transporter VFG0526 Protein 2e-47 43