|
Name : Caka_2556 (Caka_2556) Accession : YP_003549742.1 Strain : Coraliomargarita akajimensis DSM 45221 Genome accession: NC_014008 Putative virulence/resistance : Unknown Product : seryl-tRNA synthetase Function : - COG functional category : J : Translation, ribosomal structure and biogenesis COG ID : COG0172 EC number : - Position : 3097458 - 3098729 bp Length : 1272 bp Strand : + Note : TIGRFAM: seryl-tRNA synthetase; KEGG: ote:Oter_2731 seryl-tRNA synthetase; PFAM: tRNA synthetase class II (G H P and S); Seryl- tRNA synthetase, class IIa-like DNA sequence : ATGATCGACATTAAGCTCCTCCGCGAGCAGCCGGATCGTGTCCGTGCTGCGATAGCCAATAAGAAGTTCAACTGTGATAT CGATGCAGTGCTTGAACTGGACGCGACGCGTCGTGCCAAGATTACCGAGGCGGAGACTGCGCGTGCGCAGCAAAAGGCGG CTAACAAGGAAATGGCAGCCTTGGCGAAGGGCTCGCCGGAGTTTTTGGAAAAGGTGAAGGAGATGAAGGCGATTGCCGCC CAAGCCAAGGAGCTGGAAGCTGAGGCCAAAGCCGCAGATGAAGCCTTTCAGGCCCCCTTTCTTGAAATCCCGAACCTGCC GGACCCGTCTGTGCCGATTGGCAAGGGCGAAGACGAGAATGTGGTCGCATCAACCTGGGGCGATGCGGATGCCGACTTCC CGAATGCGGTGGCTCACTTTGATATTCCGTGGTTTGAGTCCCGAATCGATTTTGCACGTGGCGTGAAGGCAACCGGTGCA GGGTTCCCCTTCTATGTTGGTGAAATGTCCCGACTCGTGCGTGCCTTGGTTAATTTCTTTCTGCAGGAAGCTCAGGAAAA CGGATACGAGGAGGTCTTGCCACCGATCGTGGTCAATGCGGAGAGTGCCACTGCGACCGGCCAGTTGCCCGATAAGGAAG GGCAGATGTATGTGGATGAGAATGAAGGCTTGTACCTCATTCCGACCGCAGAGGTGCCAGTGACTAATTTTTATCGAGAT GAGATCTTGGAGGCTGATCAGCTGCCAATCTATCGTTGCGCGTATACACCCTGTTTTCGTCGTGAAGCTGGCAGCTGGGG GGCGCACGTGCGTGGCCTGAATCGCCTGCATCAGTTTGACAAGGTTGAGTTGGTCAAGTGGACGGACGCTGAGACCAGCA TGGATGAGCTGGAGAAGTTGCGTGAAAACGTCGAAGGGACGCTTCAGAAGCTTGGCCTTCCATACCGTGTGCTGCGTATG TGCACGGGTGATATTGGCTTTCCGCATGCCAAGCAGTATGACTTGGAAGTCTTCGCTGCAGGGCAAAAGCGTTGGTTGGA GGTCTCCAGCTGCTCCAACTTTACTGACTTCCAGGCGCGCCGTGCGGGCATTCGCTACCGTGGTGAAGATGGCAAGCCGG TGACTGCGCATACCCTGAATGGGTCAGGTCTGGCCGTTCCGCGCGTATTGGCTGCGATTTTGGAGAATAATCTGCAGGCG GATGGTCGCGTTAAGGTGCCGGAATGTTTGCAATACTGGATGCAGCAAGCGTACATTGGTGAGTCGAAGTAA Protein sequence : MIDIKLLREQPDRVRAAIANKKFNCDIDAVLELDATRRAKITEAETARAQQKAANKEMAALAKGSPEFLEKVKEMKAIAA QAKELEAEAKAADEAFQAPFLEIPNLPDPSVPIGKGEDENVVASTWGDADADFPNAVAHFDIPWFESRIDFARGVKATGA GFPFYVGEMSRLVRALVNFFLQEAQENGYEEVLPPIVVNAESATATGQLPDKEGQMYVDENEGLYLIPTAEVPVTNFYRD EILEADQLPIYRCAYTPCFRREAGSWGAHVRGLNRLHQFDKVELVKWTDAETSMDELEKLRENVEGTLQKLGLPYRVLRM CTGDIGFPHAKQYDLEVFAAGQKRWLEVSSCSNFTDFQARRAGIRYRGEDGKPVTAHTLNGSGLAVPRVLAAILENNLQA DGRVKVPECLQYWMQQAYIGESK |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| serS | YP_003446791.1 | seryl-tRNA synthetase | Not tested | The aminoglycoside resistance gene cluster | Protein | 8e-67 | 47 |
