Gene Information

Name : SJA_C1-32120 (SJA_C1-32120)
Accession : YP_003546658.1
Strain :
Genome accession: NC_014006
Putative virulence/resistance : Unknown
Product : putative integrase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0582
EC number : -
Position : 3189462 - 3190694 bp
Length : 1233 bp
Strand : -
Note : symbiosis island integrase

DNA sequence : 
ATGGCACTTTCGGCGGTGGCAATTAAAGCCGCCAAGGGGCGCGCGAAGCCCTACAAGCTTACCGACGGCGACGGACTGTT
CCTCTATGTGACGCCCAAGGGTGGACGCTACTGGCGGATGAACTATCGTTATCTCGGCAAGCAGAAGACCCTCGCCTTCG
GCGTGTGGCCCGACACCGGTCTGGCCGATGCTCGCGAACAGCGCGATGCCGCCCGCAAGCTGCTGGCGCGGGGTGAAGAC
CCGGCCGAGCGAATCAAGCTGGACCGGATCGCGGCGACAGTGGCTGCCTCCAACAGCTTCAAGGCAGTCGCCGACGAATG
GCTGATCAAGGTCGAGCGGGAGGATCGCTCGGCAGCTACGATGAAGAAGCTGCGCTGGCTCCTCGCCTTCATCAACGCCT
CCATCGGTAAGCGTCCTATCGCTTCGATCTCGGCGCAGGAGCTACTGGTCATGCTCCGCAAGATGGAGGGCAAGGGCCGA
TACGAGACCGCCAAGCGGCTGCGCAGCACCTGTTCGCAAATCTTCCGCTATGCCATTGCCACGGCCCGCGCCGAGCGAGA
TGTCGCAGCAGACCTGCGCGGCGCGCTGATCGCCCCCAAGCCAGTACATCGCGCCGCCATCACGTCGGCCCCAGGCGCAG
GAGCACTTCTGCGGGCCATCGAATCATTCGAGGGCCATTCCAACACCAGAGCAGCCCTGCGGCTGCTGCCGCATGTCTTT
GTGCGGCCCGGTGAACTGCGCTTTGCTGAATGGGCGGATTTCGACCTGGAGAAGGCGATCTGGACCATCCCGCCACACAA
GACCAAGATGCGGCGTGCCCATAGCATCCCGCTCTCCAAACAGGCCATCGCGATCATCGGCTCGATCGAGCATGATGCGG
ATTACAGCCGCTTCCTCTTCCCCTCCCTCCGGTCGGTCGATCGGCCGATGTCGGAGAACACCATTAACGCCGCATTGCGG
CGCATGGGCTATGCCCAGGATGAAATGACTGGCCATGGCTTCCGGGCCATGGCAGCGACGCTGCTCAACGAGATGGGGCT
ATGGCATCCCGACGCCATCGAACGGCAACTCGCTCATTGCGACAACAATGCCGTGCGCCGCGCCTATACGCGAGGGGAGT
ATTGGGATGAGCGGGTCCGCATGATGCAGCATTGGTCCGATCACCTGGACTTCCTGCGTGACGGCGCGAAGGTGATAAAG
GGGGATTTCAGAAAAGATGGAGAGGCCGGCTGA

Protein sequence : 
MALSAVAIKAAKGRAKPYKLTDGDGLFLYVTPKGGRYWRMNYRYLGKQKTLAFGVWPDTGLADAREQRDAARKLLARGED
PAERIKLDRIAATVAASNSFKAVADEWLIKVEREDRSAATMKKLRWLLAFINASIGKRPIASISAQELLVMLRKMEGKGR
YETAKRLRSTCSQIFRYAIATARAERDVAADLRGALIAPKPVHRAAITSAPGAGALLRAIESFEGHSNTRAALRLLPHVF
VRPGELRFAEWADFDLEKAIWTIPPHKTKMRRAHSIPLSKQAIAIIGSIEHDADYSRFLFPSLRSVDRPMSENTINAALR
RMGYAQDEMTGHGFRAMAATLLNEMGLWHPDAIERQLAHCDNNAVRRAYTRGEYWDERVRMMQHWSDHLDFLRDGAKVIK
GDFRKDGEAG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ESA_03025 YP_001439090.1 hypothetical protein Not tested Not named Protein 6e-66 43
aec33 AAW51716.1 Int Not tested AGI-3 Protein 5e-69 41
int CAC39282.1 integrase Not tested LPA Protein 4e-69 41
int AAD44730.1 Int Not tested SHI-2 Protein 5e-69 41
intB CAD42017.1 bacteriophage P4 integrase Not tested PAI II 536 Protein 1e-60 41
ECO111_3718 YP_003236059.1 putative integrase Not tested LEE Protein 2e-66 41
ECUMN_3322 YP_002414004.1 integrase Not tested Not named Protein 5e-67 41
ORF_1 AAZ04412.1 phage integrase Not tested PAI I APEC-O1 Protein 4e-68 41
c3556 NP_755431.1 prophage P4 integrase Not tested PAI I CFT073 Protein 2e-67 41
c5216 NP_757064.1 prophage P4 integrase Not tested PAI II CFT073 Protein 2e-67 41
APECO1_3534 YP_854214.1 P4-like integrase Not tested PAI I APEC-O1 Protein 5e-68 41
int AAT48697.1 CP4-like integrase Not tested PAI I 4787 Protein 3e-67 41
int AAL51003.1 CP4-like integrase Not tested LEE Protein 3e-67 41
int AAK16198.1 Int Not tested PAI-I AL862 Protein 2e-68 41
int ADD91747.1 P4 integrase Not tested PAI-I AL862 Protein 2e-68 41
intP4 CAE85151.1 CP4 integrase protein Not tested PAI V 536 Protein 2e-68 41
SESS1635_03816 AFO66367.1 bacteriophage integrase Not tested SESS LEE Protein 6e-66 41
SESS1296_03598 AFO66301.1 bacteriophage integrase Not tested SESS LEE Protein 6e-66 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
SJA_C1-32120 YP_003546658.1 putative integrase VFG1536 Protein 8e-61 41
SJA_C1-32120 YP_003546658.1 putative integrase VFG1693 Protein 9e-68 41