Gene Information

Name : wcbD (SJA_C1-30170)
Accession : YP_003546463.1
Strain :
Genome accession: NC_014006
Putative virulence/resistance : Virulence
Product : capsular polysaccharide export protein
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3524
EC number : -
Position : 3004960 - 3006150 bp
Length : 1191 bp
Strand : +
Note : -

DNA sequence : 
ATGAATATCGCTCACGCCAAAATGGAACCGGGCGTTGGACATGCACAGGACAATCAGAAAAGCGTGCAAAATGATGCAGA
GATGCCCGAAATGATCGCAGCCAGGTTTAAAAAAATCCCCCCGCTCTTCCTGATTGCGGTCATCATCCCCACCCTGCTGG
CCACCCTGTATTTCGGCTTCCTCGCCTCGGACGTGTATATCTCCGAGTCACGCTTCACCGTCCGAAGCCCTGAAAAATCG
ACACCTACCGGCCTTGGCGCGCTATTCAAAAGCTCAGGCTTCGCCAACGCGGGAGATGAGGTTTACGCAGCCCAGGATTA
TGTGCAGTCCCGCGACGCGCTGGAGGCACTCAACCGGAAAAACGCCTTTATGCGCGCCTATTCCGCCCCATCCATCTCTG
TCCTAGACCGTTTTGCCGGTATGGGCTGGGGGACCACCTTCGAGGATTTGTATAAATATTATAAGAAGAAGGTGGATGTA
AAATACGAATCCTCGTCCTCCATCGTTACTCTGACCGTCCGCGCGTATACGCCGCAGGATGCGGGACGGTTTAACGAGCA
ACTGCTGGAAATGGCCGAAGCCACTGTCAACAAGCTCAATGAACGCGGGCGACAGGACTTGATTCGTTTCGCCCAGAGAG
AAGTCGACGACGCCAAAGCCAAGTCGCAAAGCGCGGCGCTAGCCCTGTCCGCCTATCGCAACGCGGCGGGGGTCGTGGAC
CCGGAAAAGCAAGCGACGGTCCAGATCCAGATGATTTCGAAGTTGCAGGACGAATTGATTGCCACCCGCACGCAACTGAC
AGAAACACGCACCGTATCCCCCCAGAATCCGCAAATCGAAGTGCTGACAGCACGGGCAGAAAGCCTGAGCAATGAGATTG
ACAAGCAGCTTGGCCTGGTAGCCGGCAGCAGTAAGTCGCTTTCGTCACGCGCCGCCCAGTATCAGCGCGTGTTGCTGGAA
AACCAGTTCGCTGACAAGCAACTGGCCAGTGCGCTGGCGTCCCTCGATGAAGCCCGGAATGAAGCCAACCGCAAACAGGC
GTATGTCGAGCGTATTGTACAACCCAATGTTCCCGATGAACCGTTGGAACCGCGGCGCTGGCGCGGCATCGTATCGACGC
TTGTCCTGGGCCTTGCCGCGTGGGGCATCCTCAGCATGTTGATCGCAGGTATGCTAGAACACAAGGACTAG

Protein sequence : 
MNIAHAKMEPGVGHAQDNQKSVQNDAEMPEMIAARFKKIPPLFLIAVIIPTLLATLYFGFLASDVYISESRFTVRSPEKS
TPTGLGALFKSSGFANAGDEVYAAQDYVQSRDALEALNRKNAFMRAYSAPSISVLDRFAGMGWGTTFEDLYKYYKKKVDV
KYESSSSIVTLTVRAYTPQDAGRFNEQLLEMAEATVNKLNERGRQDLIRFAQREVDDAKAKSQSAALALSAYRNAAGVVD
PEKQATVQIQMISKLQDELIATRTQLTETRTVSPQNPQIEVLTARAESLSNEIDKQLGLVAGSSKSLSSRAAQYQRVLLE
NQFADKQLASALASLDEARNEANRKQAYVERIVQPNVPDEPLEPRRWRGIVSTLVLGLAAWGILSMLIAGMLEHKD

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ctrB NP_273136.1 capsule polysaccharide export inner-membrane protein Not tested IHT-A Protein 3e-63 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
wcbD YP_003546463.1 capsular polysaccharide export protein VFG2565 Protein 3e-71 47
wcbD YP_003546463.1 capsular polysaccharide export protein VFG0256 Protein 1e-63 45
wcbD YP_003546463.1 capsular polysaccharide export protein VFG0698 Protein 3e-58 43
wcbD YP_003546463.1 capsular polysaccharide export protein VFG0686 Protein 3e-58 43