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Name : ldcC (EAM_0836) Accession : YP_003537925.1 Strain : Erwinia amylovora ATCC 49946 Genome accession: NC_013971 Putative virulence/resistance : Virulence Product : lysine decarboxylase Function : - COG functional category : E : Amino acid transport and metabolism COG ID : COG1982 EC number : - Position : 943205 - 945379 bp Length : 2175 bp Strand : + Note : - DNA sequence : ATGAATATTATTGCCATCATGGGCCCGCATCGCGTCTTCTACAAAGATGAGCCTGTCCGTGAGCTGGATGTCGCATTAAC ACGACAGGGGTTCCACACCGTCTATCCGCAGGGTGCCGGAGATTTGCTGAAGCTTGTAGAGCATAATCCGCGAATTTGTG GCGTGGTATTTGACTGGGATGAGTACAGTCTCGATCTCTGTCGTGAGATCAACCAGCTGAATGAATATCTGCCGCTTTAC GCGTTTATCAACACCGATTCGACGATGGATGTTGGCGTTAACGAGATGCGCATGGCGATCTGGTTTTTTGAGTATGCGCT TAATGCAGGTGAAGAGATTGCCCAGCGTATCCGCCAATATACCGATGAATACATCGATACCATCACGCCGCCGCTGACCA AAGCGCTGTTCAACTACGTCAAAGAGGGAAAAACAACGTTTTGTACTCCGGGGCATATGGCGGGTACGGCATTTCAGAAA AGCCCGGTGGGCAGCCTGTTCTATGACTTCTTTGGTGCCAATACGCTGAAAGCGGATATTTCGATTTCGGTCAGTGAATT AGGTTCGTTGCTCGACCACACCGGCCCCCATCTTGAGGCGGAAGAGTATATCGCGCGCACCTTTGGCGCGGAGCAAAGCT ACATGGTCACCAATGGCACCTCCACCGCCAACAAGATTGTCGGCATGTACGCGGCGGCGGCAGGCAGTACCGTGTTGATA GACCGCAACTGCCATAAATCCCTGACCCATCTGCTGATGATGAGCGACATTATTCCCGTCTGGCTGAAGCCAACGCGCAA TGCGCTGGGGATCCTTGGCGGCATTCCGAAGCGAGAATTTAGCAAAGAGAGCATTGCGCTCAAGGTGGCACAAACACCGC GCGCCAGCTGGCCGGTACATGCGGCGATCACTAATTCGACCTATGACGGGCTGTTGTATAACACGCAATACATCAAAGAA ACGCTGGAGGTGCCGTCGATCCACTTCGACTCGGCGTGGGTGCCTTACACGAATTTCCACCCGATCTATCAGGGATTGAG CGGCATGAGCGGGGAACGCACGCCGGGTAAGGTGATTTACGAGACGCAGTCGACTCACAAATTGCTGGCCGCGTTCTCTC AGGCTTCGCTGATCCACATCAAAGGTGACTACGATGAACAAACCTTCAATGAAGCCTATATGATGCATACCACCACTTCG CCTAACTACGCCATCGTCGCCTCTATCGAAACGGCGGCGGCGATGCTGCGCGGTAACTCTGGCAAACGACTGATTAACCG TTCGGTAGAGCGCGCGCTGCATTTCCGCCGTGAAGTACAGCGGCTGCGTGAAGAGTCAGACGGCTGGTTCTTCGATATCT GGCAGCCGGACGGGGTTGATGAGCCGGAATGTTGGGCGATCCAGCCCGGTGATGAGCAGTGGCATGGTTTCCGTGATGCC GATGCCGATCATATGTATCTGGATCCGATCAAAGTGACCATCCTGACGCCCGGCATGAGCGAGATGGGTGAGATGGCGGA AGAGGGCATTCCGGCAGCGTTGGTAGCCAAATTCCTTGACGAACGTGGCGTGGTGGTGGAAAAGACCGGGCCGTATAATC TGCTGTTTTTGTTCAGTATTGGCATCGATAAAACCAAAGCAATGAGCGTACTGCGCGGACTGACCGAGTTTAAACGCGCT TACGATCTCAATCTGCGGGTAAAAAACATGCTGCCGGATCTGTACGCACAGGATCCTGACTTATATCGTAATATGCGCAT TCAGACTCTGGCTCACGGCATCCACAACCTGATCCGCCAACACGATCTGCCACGCCTGATGCTACAAGCTTTCGCCACGC TGCCGGAAATGAAGTTGACGCCGCATCAGATGTTTCAGCAGCAGGTAAAGGGCAACGTGGAAACCGTCGATATCAGCCAG CTGGTCGGGCGCGTGTCGGCCAACATGATCTTGCCTTATCCCCCCGGCGTGCCGCTGGTGATGCCGGGGGAAATGATCAC TGAAGAAAGTCGCCCGGTGCTCGATTTCTTACTGATGCTGTGTACCATCGGCAGACATTATCCCGGCTTTGAAACCGATA TTCACGGTGCGAAACTGACCGAAGAGGGGCAGTATCTGGTGCGGGTGCTGACTCACGATGGCGAAGTGCGGGCTGCCGGA AATGCGGGGGTTTAA Protein sequence : MNIIAIMGPHRVFYKDEPVRELDVALTRQGFHTVYPQGAGDLLKLVEHNPRICGVVFDWDEYSLDLCREINQLNEYLPLY AFINTDSTMDVGVNEMRMAIWFFEYALNAGEEIAQRIRQYTDEYIDTITPPLTKALFNYVKEGKTTFCTPGHMAGTAFQK SPVGSLFYDFFGANTLKADISISVSELGSLLDHTGPHLEAEEYIARTFGAEQSYMVTNGTSTANKIVGMYAAAAGSTVLI DRNCHKSLTHLLMMSDIIPVWLKPTRNALGILGGIPKREFSKESIALKVAQTPRASWPVHAAITNSTYDGLLYNTQYIKE TLEVPSIHFDSAWVPYTNFHPIYQGLSGMSGERTPGKVIYETQSTHKLLAAFSQASLIHIKGDYDEQTFNEAYMMHTTTS PNYAIVASIETAAAMLRGNSGKRLINRSVERALHFRREVQRLREESDGWFFDIWQPDGVDEPECWAIQPGDEQWHGFRDA DADHMYLDPIKVTILTPGMSEMGEMAEEGIPAALVAKFLDERGVVVEKTGPYNLLFLFSIGIDKTKAMSVLRGLTEFKRA YDLNLRVKNMLPDLYAQDPDLYRNMRIQTLAHGIHNLIRQHDLPRLMLQAFATLPEMKLTPHQMFQQQVKGNVETVDISQ LVGRVSANMILPYPPGVPLVMPGEMITEESRPVLDFLLMLCTIGRHYPGFETDIHGAKLTEEGQYLVRVLTHDGEVRAAG NAGV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| cadA | NP_756988.1 | lysine decarboxylase, inducible | Not tested | PAI II CFT073 | Protein | 0.0 | 71 |
| unnamed | CAD66195.1 | putative cadaverin decarboxylase | Virulence | PAI III 536 | Protein | 0.0 | 62 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| ldcC | YP_003537925.1 | lysine decarboxylase | VFG1670 | Protein | 0.0 | 62 |
