Gene Information

Name : basR (EAM_3083)
Accession : YP_003540146.1
Strain : Erwinia amylovora ATCC 49946
Genome accession: NC_013971
Putative virulence/resistance : Virulence
Product : two-component response regulator
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 3378354 - 3379013 bp
Length : 660 bp
Strand : +
Note : -

DNA sequence : 
ATGAAAATACTGATTGTAGAAGATGATACGCTGCTGCAACAGGGTCTGAACCTCGCCCTGACGGGAGAAGGTTATGCCGT
TGACTGCGCGGCGAATGCGGCCCAGGGGACGGCGTTTTTGCAAAGCGGCCAGTATAGCCTGGTGGTGCTGGATCTTGGCC
TGCCGGATAGAGATGGCGCCGATCTGCTACGTCAGTGGCGTAAGGAACAGCAGGATCTGCCGGTGCTGATCCTCTCCGCA
CGTGATGCCCTGTCCGACCGAGTGGATGGACTGGATGCCGGTGCCGACGACTACCTGATGAAGCCCTTTGCGCTGGCCGA
GCTGAAAGCGCGCGTCCGCGCGCTGATCCGTCGCTATCAGGGCCAAAGCGATAACCTGTTGCAGCATGGCGATATCACCC
TCAATCTCTCTTCACAGCAGGTTGCTGTCGATCTTCAGCCGGTGGACGTGACGCCGAAGGAGTTTTCTCTGTTGACCCGC
CTGCTGATGCGTATTGGCCAGACGGTACACCGCGAAACTTTGCAGCAGGATCTCTATAGCTGGCAGGATGACACCTCTTC
AAATACACTTGAAGTTCATATGCATAATCTGCGGCGCAAACTGGGTAAAGATCGGATTAAAACGGTACGCGGCGTGGGTT
ACCGGCTGGAAGAGCGCTGA

Protein sequence : 
MKILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLVVLDLGLPDRDGADLLRQWRKEQQDLPVLILSA
RDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQGQSDNLLQHGDITLNLSSQQVAVDLQPVDVTPKEFSLLTR
LLMRIGQTVHRETLQQDLYSWQDDTSSNTLEVHMHNLRRKLGKDRIKTVRGVGYRLEER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-38 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 8e-30 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_003540146.1 two-component response regulator BAC0487 Protein 1e-59 64
basR YP_003540146.1 two-component response regulator NC_002516.2.879194.p Protein 1e-34 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_003540146.1 two-component response regulator VFG0473 Protein 4e-56 58
basR YP_003540146.1 two-component response regulator VFG0596 Protein 3e-30 41