|
Name : EAM_1559 (EAM_1559) Accession : YP_003538641.1 Strain : Erwinia amylovora ATCC 49946 Genome accession: NC_013971 Putative virulence/resistance : Virulence Product : type III secretion system protein Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 1679173 - 1681242 bp Length : 2070 bp Strand : + Note : - DNA sequence : ATGCTAAACAATATCATTTTTCAATTGCGAACACGTCCTGAACTTATCGTCTTGTTGATGATGATTATGGTCGTAGTGAT GTTGATTATTCCACTGCCAACTTATTTAGTTGACTTTTTTATCGCTCTTAATTTAATAATGGCCTTATTGATTTTCATCG GGTCTTTTTATATCAGTAGAATTCTGGATTTTTCGACTTTCCCATCGATGATTATGATCAGTACCATATTCCGTCTGGCT ATCTCTATCAGTACTAGCCGTTTGGTTCTGACGGATGCGGATGCCGGTGAAATCATTGCCAGCTTTGGCCAGTTCGTTAT TGCCGATAGTCTGGTTGTAGGGATGGTTATCTTCTTCATCGTCACAGTGGTGCAATTTATCGTTATCACAAAAGGATCTG AGCGAATTGCAGAGGTTGCAGCTCGCTTTTCTTTAGATGCCATGCCGGGTAAGCAAATGAGTATCGATGCTGACCTTAAG GCGGGAGTGATCGATGAAGAGGGAGTCAGGCAGCGTCGTAGTGACCTTGAAGCTGAAAGCCAGCTTTATGGTGCTCTCGA TGGCGCAATGAAGTTTATTAAAGGCGATGCTATTGCTGGAATAATTATTATTTTGGTTAACCTGCTTGGAGGGCTTGCTA TTGGAGTAGTACAGAAAGGTATGAATATATCACATGCGCTATCCATATATGCATTATTGACTATTGGTGAGGCTTTAGTG GCGCAGATCCCTGCTTTGCTCATCTCAATTAGCGGGGGGCTAATTGTAACTCGTGTTAATAACAACGAAAATTCAAATCT GGGTGCTAAGATACTACAGGATCTTTTTCTCAATAAGTCTACATTAGTAATAACAGCAATCCTTGCCGTGACATTGGGCT TATTGCCAGGATTTCCTTTAGTTGTTTTTCTCTTGTTAGCTATCATTTTAATAGGTGTTTTTTACAAGGGTAAATACAAT AAAAATAACACTCTAAGTCCAGATGAGGCAGGGATTACAGAACAGTCCACAGTCAAAAATAAGCCTGTAGTAATAGATGG GGAATACATCCCTGAGACTGTGCCGCTTATTGTCAGTGCATGGAGTGGTTATGAAAGATATATTACTAAAAATAACTTCC CCTCTTTACTAAAACGTCATTTCTTCATAGAGTACGGTGTTCGTCTACCTGATTTAATTATGAATTATGACCAGCATGCT GAACAGGGAAAGTTGACTGTCGCTATTAATGAAATAAAAGTTGCGAGCTATGATTTTTTCCCTGAAATGCACAAAATTCT TTTCAGAGGAGATGAGTTGAAGTTGATAGACGACAACGTAAGGGTGATAAGTACCTCTCAGGGTCATGCCTATTGGATAC CTGAACATAGACATGGAGCTGCTTTTAAACTTGGTTTTTATTCTAGAAATGCAATTGATGAATCCTATTCTTGCATATCT TCTTTACTTGTTCACGATATTTCTGAATTTTTTGGTATTCAGGAAGCTAAGATGTTACTTGACGATCTTGAAAAGAAATA TCCTGACTTGCTGAAAGAGTGCTATCGCAACAACACGGTTCAGCGAATTACTGAGGTATTTCAACGGTTACTTAAGGAGC GTATCTCAATCAGAAATATGCGGTTGATTTTGGAAGCTTTAGTGCAATGGGCTCCCAAGGAAAAAGATCCTATTATGTTG GTTGAACATGTGCGTGGTGTCTTAGCACGCTATATTTCCAACAGATTCTCCGCACACGGACGTATCAGAACTGTGGTAAT GTCACATGATATGGAAAATATCATCCGCGATGGGATCCGCCAGACATCAGGTGGCACATTTATCAATCTACCACCTAATG AAATAGAGGATATTATAAAATCCCTGGGGGTTTGCCTTAAAAACAATAGGGTGAATGCGAGGGATGTTATTCTAATGGTA TCTATGGATATAAGACGTTTCGCTAAAACAATTATTGAAGGGACTTATCCTGAATTAGATGTACTCTCTTTTGGTGAGGT CTCTGCCGGCGTAGAAGTTGACGTCATTGGTTCGTTGGAAAATTATAGTGAGGGTGTAAATGAAATATGA Protein sequence : MLNNIIFQLRTRPELIVLLMMIMVVVMLIIPLPTYLVDFFIALNLIMALLIFIGSFYISRILDFSTFPSMIMISTIFRLA ISISTSRLVLTDADAGEIIASFGQFVIADSLVVGMVIFFIVTVVQFIVITKGSERIAEVAARFSLDAMPGKQMSIDADLK AGVIDEEGVRQRRSDLEAESQLYGALDGAMKFIKGDAIAGIIIILVNLLGGLAIGVVQKGMNISHALSIYALLTIGEALV AQIPALLISISGGLIVTRVNNNENSNLGAKILQDLFLNKSTLVITAILAVTLGLLPGFPLVVFLLLAIILIGVFYKGKYN KNNTLSPDEAGITEQSTVKNKPVVIDGEYIPETVPLIVSAWSGYERYITKNNFPSLLKRHFFIEYGVRLPDLIMNYDQHA EQGKLTVAINEIKVASYDFFPEMHKILFRGDELKLIDDNVRVISTSQGHAYWIPEHRHGAAFKLGFYSRNAIDESYSCIS SLLVHDISEFFGIQEAKMLLDDLEKKYPDLLKECYRNNTVQRITEVFQRLLKERISIRNMRLILEALVQWAPKEKDPIML VEHVRGVLARYISNRFSAHGRIRTVVMSHDMENIIRDGIRQTSGGTFINLPPNEIEDIIKSLGVCLKNNRVNARDVILMV SMDIRRFAKTIIEGTYPELDVLSFGEVSAGVEVDVIGSLENYSEGVNEI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ysaV | AAS66840.1 | YsaV | Not tested | SSR-1 | Protein | 0.0 | 65 |
| invA | YP_217815.1 | invasion protein | Virulence | SPI-1 | Protein | 3e-140 | 52 |
| invA | NP_457290.1 | possible secretory protein (associated with virulence) | Virulence | SPI-1 | Protein | 3e-140 | 52 |
| invA | NP_806499.1 | virulence-associated secretory protein | Virulence | SPI-1 | Protein | 3e-140 | 52 |
| invA | NP_461817.1 | needle complex export protein | Virulence | SPI-1 | Protein | 3e-140 | 52 |
| ECs3731 | NP_311758.1 | EivA | Not tested | LIM | Protein | 3e-137 | 51 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 3e-131 | 50 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| EAM_1559 | YP_003538641.1 | type III secretion system protein | VFG1780 | Protein | 2e-150 | 54 |
| EAM_1559 | YP_003538641.1 | type III secretion system protein | VFG0557 | Protein | 1e-140 | 52 |
| EAM_1559 | YP_003538641.1 | type III secretion system protein | VFG1006 | Protein | 2e-121 | 50 |
