Gene Information

Name : lolD (HVO_2163)
Accession : YP_003536188.1
Strain : Haloferax volcanii DS2
Genome accession: NC_013967
Putative virulence/resistance : Virulence
Product : ABC transporter ATP-binding protein
Function : -
COG functional category : V : Defense mechanisms
COG ID : COG1136
EC number : -
Position : 2033868 - 2034617 bp
Length : 750 bp
Strand : +
Note : -

DNA sequence : 
ATGTCTGATTCGGTCTCCGAACACCGCCCTCCCGCCGCGGCGGACTCGGCGGCGACGCTCCGTTGCGAGCGGGTCGTCCG
CGAGTACACCCGCGGCTCCGACTCGTTTTTCTCCCGCGGGTCCGACGCCCCGACGGTCCGCGCGCTCGACGGCGTCTCGC
TTTCGGTCTCGACGGGCGAGTTCGTCGCCATCGCCGGGCCGAGCGGGAGCGGTAAGTCCACGCTGTTGCACCTCCTCGCC
GCGCTCGACACGCCCACCCGCGGCGACATCCGGGTCGCGGGCACCGACGTTCGGTCGCTGTCGAACCGCGGGCGGACGAA
ACTCCGCCGCGACACCATCGGCATCGTCTTCCAGCATTTCCACCTGCTGCCCTCGCTTTCGGCCCGCGGCAACGTCGCGC
TCCCGCTCATCGAACGCGGCGCGTCGAAGCGCGACCGCCGCGCCCGCGCCGAAGACCTCCTCGAACAGGTGGGGCTCGGC
GACCGCGCCGGCCACAAGCCGGGGGAACTCTCCGGCGGCGAGCAACAGCGCGTCGCCATCGCCCGCGCGCTCGTCTCCGA
CCCCGCGGTCCTCATCGCCGACGAGCCGACCGGCGAGTTGGACACCGAGACGGGCCAACGCGTCCTCGACTACATCGAAC
AGACCGCCACGGAGCGGGCGGTCGTCGTCGCCACGCACGACGAACACGTCATCGAGCGGGCCGACCGCGTCGTCCGCCTC
CGCGACGGCCGCGTGGTGAGCGATGGCTAG

Protein sequence : 
MSDSVSEHRPPAAADSAATLRCERVVREYTRGSDSFFSRGSDAPTVRALDGVSLSVSTGEFVAIAGPSGSGKSTLLHLLA
ALDTPTRGDIRVAGTDVRSLSNRGRTKLRRDTIGIVFQHFHLLPSLSARGNVALPLIERGASKRDRRARAEDLLEQVGLG
DRAGHKPGELSGGEQQRVAIARALVSDPAVLIADEPTGELDTETGQRVLDYIEQTATERAVVVATHDEHVIERADRVVRL
RDGRVVSDG

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
Cp1002_1464 YP_005681730.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 1e-31 45
CpC231_1466 YP_005683828.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 45
cpfrc_01473 YP_003783873.1 hypothetical protein Not tested PiCp 5 Protein 2e-31 45
CpI19_1473 YP_005685914.1 ABC transporter ATP-binding protein Not tested PiCp 5 Protein 2e-31 45
cur_1502 YP_001800896.1 cell division ATP-binding protein FtsE Not tested Not named Protein 1e-28 43

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_003536188.1 ABC transporter ATP-binding protein NC_008702.1.4606598. Protein 4e-35 51
lolD YP_003536188.1 ABC transporter ATP-binding protein NC_012469.1.7686878. Protein 3e-41 48
lolD YP_003536188.1 ABC transporter ATP-binding protein CP001581.1.gene798.p Protein 3e-34 43

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
lolD YP_003536188.1 ABC transporter ATP-binding protein VFG2059 Protein 8e-15 43