Gene Information

Name : spaP1 (EAMY_0785)
Accession : YP_003530143.1
Strain : Erwinia amylovora CFBP1430
Genome accession: NC_013961
Putative virulence/resistance : Virulence
Product : surface presentation of antigens protein SpaP
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 872602 - 873273 bp
Length : 672 bp
Strand : +
Note : yscR: type III secretion apparatus protein, YscR/HrcR family, Similar to flagellar FliP protein

DNA sequence : 
ATGCTAAGCAATGATATTTCTTTAATTGCGCTACTCTCCTTTTTCACATTACTGCCTTTTATTATTGCCGGTGGAACCTG
TTTCATTAAGTTTTCCATCGTTATGGTGATGGTACGCAATGCTTTGGGGATCCAGCAGGTCCCTTCGACGTTAACTCTTA
ATGGCATTGCACTCATTATGACCGCTTTTGTGATGATGCCAATATGTCAGAAAATCTCCAGCTATGTCGAAACTAACCAT
ATAGATTTTAACAATAGCGCCTCTGTTACTCAGTTGATGGATCAGGGATTAGGAGGCTATCGGGATTACCTCGTGCGATA
TTCCGATCATGAATTGATTCGCTATTTCAACAAAATACAGCAGCAGCAGGCAGGAGAGTCAGCGCCGGAAGTTGAGGAGC
ATCAATTAAGCTCTCTCTCTCTAATGACCTTGATGCCCGCATATGCGCTTAGCGAAATTCAAAGCGCCTTTAAAATTGCT
TTTTACCTGTACGTTCCATTTGTGGTCATTGATTTGGTCGTGTCCAGTATATTACTGGCGTTGGGAATGATGATGATGAG
CCCGGTGACGATCTCAATTCCGATTAAATTGATTCTGTTTGTTGCCATGAATGGCTGGAGCTTACTCACTAAAGGAATGA
TCGCTCAATATACCGATCTGATGACGTCATGA

Protein sequence : 
MLSNDISLIALLSFFTLLPFIIAGGTCFIKFSIVMVMVRNALGIQQVPSTLTLNGIALIMTAFVMMPICQKISSYVETNH
IDFNNSASVTQLMDQGLGGYRDYLVRYSDHELIRYFNKIQQQQAGESAPEVEEHQLSSLSLMTLMPAYALSEIQSAFKIA
FYLYVPFVVIDLVVSSILLALGMMMMSPVTISIPIKLILFVAMNGWSLLTKGMIAQYTDLMTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 7e-70 76
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 7e-59 62
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 7e-59 62
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 3e-59 62
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 3e-59 62
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 6e-60 61
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 1e-58 60
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 4e-52 52
escR AAK26700.1 EscR Virulence LEE Protein 4e-34 42
escR AAL57527.1 EscR Virulence LEE Protein 4e-34 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 4e-34 42
escR CAI43889.1 EscR protein Virulence LEE Protein 4e-34 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 6e-34 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 6e-34 42
unnamed AAL06354.1 EscR Virulence LEE Protein 2e-32 42
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 5e-34 41
escR AAC31528.1 L0049 Virulence LEE Protein 5e-34 41
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 4e-34 41
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 5e-34 41
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 7e-34 41
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 7e-34 41
escR AAC38369.1 EscR Virulence LEE Protein 3e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
spaP1 YP_003530143.1 surface presentation of antigens protein SpaP VFG0551 Protein 1e-59 62
spaP1 YP_003530143.1 surface presentation of antigens protein SpaP VFG2455 Protein 4e-57 59
spaP1 YP_003530143.1 surface presentation of antigens protein SpaP VFG1773 Protein 7e-59 58
spaP1 YP_003530143.1 surface presentation of antigens protein SpaP VFG1012 Protein 2e-54 57
spaP1 YP_003530143.1 surface presentation of antigens protein SpaP VFG0394 Protein 2e-31 42
spaP1 YP_003530143.1 surface presentation of antigens protein SpaP VFG0827 Protein 2e-34 41
spaP1 YP_003530143.1 surface presentation of antigens protein SpaP VFG0715 Protein 2e-33 41