Gene Information

Name : hrcJ (EAMY_0544)
Accession : YP_003529902.1
Strain : Erwinia amylovora CFBP1430
Genome accession: NC_013961
Putative virulence/resistance : Virulence
Product : type III secretion inner-membrane protein HrcJ
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4669
EC number : -
Position : 618903 - 619685 bp
Length : 783 bp
Strand : +
Note : Secretory protein of YscJ/FliF family, Inner membrane ring

DNA sequence : 
ATGGCTAAATTATCTCTTAAGATGCTGCTCTTGCTGCCGGTATTGCTGTTGGTCGGCTGCAATGACCAGGTCGAACTCAA
TCACGGTCTGACAGAAAACGACGCCAACGAAGTGGCGGCGGAGCTGGGGCGTTATCATATCCAGGCGGAAAAACTCACCA
ATAAAGAAGGTATTACCGTGCTGGTAGATGCCGCAGAGTTAAATCGGGCGGTACACATTCTTGATGCGGCGGGTTTGCCG
CGACCGGCGCGCACCAACCTTGGCGAAGTATTCCAAAAGAACGGAGTGATCTCCACGCCGCTGGAAGAACGGGCGCGCTA
TATCTATGCCTTATCCCAGGAAGTTGAATCGACCCTGAGTCAGATTGACGGGGTGATCGTCGCCCGGGTACATGTGGTGC
TACCGGAGCGCATTGCGCCGGGTGAGCCGGTGCAGCCCGCCAGCGCAGCGGTGTTTATCAAATATCGCCCCGATCTCGAC
CCCGATGTTATCGAACCGCGCATCCGGCGCATGGTTGCCAGCAGCCTGCCGGGCCTGGCCGGTCGGTCAGACAAAGATTT
GGCGATTGTCTTTGTCCCCGCCGAGAGCTATCAGGATAAACCGCCGCAGGTTTCCTTTGGCCCGTTTTTGGTCACGCCAG
AGCGATCGGCACAGTTAAGCTGGTTGAGCGGCATGATTGGCGTGCTGATCCTGATGGTGGTAGCGGGCGTGCTGGGTTGG
CCGCACTGGCAGCGCTACCGTCAACGGCAGCAACCGCCGCCGCCCGGACAGAATAATGAGTGA

Protein sequence : 
MAKLSLKMLLLLPVLLLVGCNDQVELNHGLTENDANEVAAELGRYHIQAEKLTNKEGITVLVDAAELNRAVHILDAAGLP
RPARTNLGEVFQKNGVISTPLEERARYIYALSQEVESTLSQIDGVIVARVHVVLPERIAPGEPVQPASAAVFIKYRPDLD
PDVIEPRIRRMVASSLPGLAGRSDKDLAIVFVPAESYQDKPPQVSFGPFLVTPERSAQLSWLSGMIGVLILMVVAGVLGW
PHWQRYRQRQQPPPPGQNNE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcJ AAB49174.1 HrcJ Virulence Hrp PAI Protein 2e-104 100
hrcJ AAT96359.1 HrcJ Virulence S-PAI Protein 2e-59 65
hrcJ AAT96320.1 HrcJ Virulence S-PAI Protein 6e-59 65
hrcJ AAT96279.1 HrcJ Virulence S-PAI Protein 6e-59 65
hrcJ AAB05080.1 HrcJ Virulence Hrp PAI Protein 3e-56 64
hrcJ AAT96157.1 HrcJ Virulence T-PAI Protein 2e-54 64
hrcJ AAT96211.1 HrcJ Virulence T-PAI Protein 2e-54 64
hrcJ ABA47308.1 HrcJ Virulence S-PAI Protein 1e-61 62
hrcJ AAC35801.1 putative hrp type III secretion pathway protein Virulence Hrp PAI Protein 9e-56 62
hrcJ NP_791211.1 type III secretion protein HrcJ Virulence Hrp PAI Protein 5e-56 57
hrpC AAB00129.1 HrpC Virulence Hrp PAI Protein 4e-56 57
hrcJ NP_636607.1 HrcJ protein Virulence Hrp PAI Protein 5e-28 41
XC_3009 YP_244077.1 HrcJ protein Virulence Hrp PAI Protein 5e-28 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hrcJ YP_003529902.1 type III secretion inner-membrane protein HrcJ VFG0218 Protein 3e-27 42