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Name : hrpS (EAMY_0539) Accession : YP_003529897.1 Strain : Erwinia amylovora CFBP1430 Genome accession: NC_013961 Putative virulence/resistance : Virulence Product : sigma-54-dependent enhancer-binding protein HrpS Function : - COG functional category : K : Transcription COG ID : COG3829 EC number : - Position : 615724 - 616698 bp Length : 975 bp Strand : + Note : RNA polymerase sigma factor 54-dependent enhancer-binding protein HrpS DNA sequence : ATGAACATCAGGAATAGTGAACACTCGTCCCGGCCATGGCCGGGACGGAGAGAGCACATCTCTTTGACAGAAGAACAACC CATCGATATCCACGACACATTGGCTGAGATGATCAAAACAGTTGCACCTTTGAAAATTGATTTGGTACTGGAGGGGGAGA CCGGAACCGGAAAAGACACGCTGGCACGAAAAATTCACCAACTTTCCGGCTGCCGGGGAAAATTGGTCGCGGTTAACTGC GCGGCGATCCCCGAAACGCTGGCGGAAAGCGAACTGTTTGGCATTAATAATGGTGCTTATACCGGTGCCGGGCAGGCGCG CGCCGGCTATGTCGAAGCAGCGGATAACGGCATTTTGTTTTTGGACGAGATTGACAGCATGCCACTTTCACTGCAGGCCA AAATGCTACGCGTGCTGGAAAACAGGGGCGTTGAACGTCTTGGCGGAACCCGCTTTACCCCGGTCAATATGCGTGTCATT GTCGCAACGCAAACGCCATTGTTAACCCTGGTGGAGCGCGGCAGTTTCCGGCGCGATCTCTATTTCCGCCTAAATACGGT CAGTATTCAACTGCAACCTTTACGGGCGCGCATTGAGGTGATCATCCCGATGTTTCGTTCTTTTATTCAGAAGGCGGCAA GCACGCTGCAATGCGCACCACGCGAAATCACTCAGGAACACTATGAATGTCTGTTGAGCTATAGCTGGCCGGGGAATATC CGCGAGCTGAAAGCCGCCGCTGAACGTTTCGTACTGGGCCTACCGCCACTCGACCTTCCCTGTCATTGCGGACAGGAGCG GCCACAACTGAAAGAGTTGATGCGACGCATTGAGAAGAACGTGATCTATGATTGCCTGGTGCGTCACGGTCACAGCATTG ATGATGCGGCGCAGGAGTTGGGTATTCCTTTGCGTACGCTATATCACCGCATCAAATTATTGAACGTGAACACCGGTCGG GTTATTGCTCAGTAG Protein sequence : MNIRNSEHSSRPWPGRREHISLTEEQPIDIHDTLAEMIKTVAPLKIDLVLEGETGTGKDTLARKIHQLSGCRGKLVAVNC AAIPETLAESELFGINNGAYTGAGQARAGYVEAADNGILFLDEIDSMPLSLQAKMLRVLENRGVERLGGTRFTPVNMRVI VATQTPLLTLVERGSFRRDLYFRLNTVSIQLQPLRARIEVIIPMFRSFIQKAASTLQCAPREITQEHYECLLSYSWPGNI RELKAAAERFVLGLPPLDLPCHCGQERPQLKELMRRIEKNVIYDCLVRHGHSIDDAAQELGIPLRTLYHRIKLLNVNTGR VIAQ |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrpS | AAD24684.1 | sigma-54-dependent enhancer-binding protein HrpS | Virulence | Hrp PAI | Protein | 3e-153 | 100 |
| unnamed | AAT96283.1 | HrpS/HrpR-like protein | Not tested | S-PAI | Protein | 3e-82 | 61 |
| unnamed | AAT96324.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 3e-82 | 61 |
| unnamed | AAT96363.1 | HrpS/HrpR-like protein | Virulence | S-PAI | Protein | 1e-81 | 60 |
| hrpRS | ABA47311.1 | HrpRS | Virulence | S-PAI | Protein | 5e-80 | 59 |
| hrpR | NP_791206.1 | type III transcriptional regulator HrpR | Virulence | Hrp PAI | Protein | 3e-69 | 56 |
| hrpR | AAC34752.1 | HrpR | Virulence | Hrp PAI | Protein | 8e-69 | 56 |
| hrpS | NP_791207.1 | type III transcriptional regulator HrpS | Virulence | Hrp PAI | Protein | 2e-67 | 54 |
| hrpS | AAC35800.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 8e-69 | 54 |
| hrpR | AAC35799.1 | transcriptional regulator | Virulence | Hrp PAI | Protein | 8e-67 | 54 |
| hrpR | AAT96162.1 | HrpR | Virulence | T-PAI | Protein | 1e-69 | 54 |
| hrpR | AAT96216.1 | HrpR | Virulence | T-PAI | Protein | 1e-69 | 54 |
| hrpS | AAT96215.1 | HrpS | Virulence | T-PAI | Protein | 7e-70 | 53 |
| hrpS | AAT96161.1 | HrpS | Virulence | T-PAI | Protein | 7e-70 | 53 |
| hrpS | AAC34753.1 | HrpS | Virulence | Hrp PAI | Protein | 7e-65 | 52 |
| hrpS | ABQ88367.1 | HrpS | Virulence | Hrp PAI | Protein | 6e-65 | 52 |
| hrpS | AAA17650.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 6e-65 | 52 |
| hrpR | ABQ88368.1 | HrpR | Virulence | Hrp PAI | Protein | 3e-64 | 49 |
| hrpR | AAA17651.1 | positive regulatory factor | Not tested | Hrp PAI | Protein | 3e-64 | 49 |
