Gene Information

Name : hrpL (EAMY_0536)
Accession : YP_003529894.1
Strain : Erwinia amylovora CFBP1430
Genome accession: NC_013961
Putative virulence/resistance : Unknown
Product : RNA polymerase sigma factor HrpL
Function : -
COG functional category : K : Transcription
COG ID : COG1595
EC number : -
Position : 612539 - 613087 bp
Length : 549 bp
Strand : +
Note : sigma70-ECF: RNA polymerase sigma factor, sigma-70 family

DNA sequence : 
ATGACAGAAATTCACCTGCAAACAACTGAATCAACATCGGTCAACGATGGGCTACCGCTTAATATTGATTGGGAAGGCAT
ATTCCGTGAGCATGGGCGACGCGTGCATCATTTTATTCGCAAGCGCGTATCCCATCGCGAGGATGCCGAAGATCTGGAGC
AAATGACCTGGCTGGAGGTTTTGCGCAACCGTGACAAATTCGCTGGCGCGTCACGGCCAGAAACCTGGGTGTTTGGCATT
GCCTTAAATTTAGTGCGCAACCATTTTCGCCTGCAGTCCGGACGACCGCGTTGTGATGAACTGGAAGACGATATCATCCT
GACTCAGGGCGACGATCCCAGCCATATCACCGAATATCAGCGTCTGCTTAATTCGACGCTTAATTCCATTGCCAACTTGC
CGGAAGATACGCGCCGTCTGTTGAACATGCTGGTCGAGAAAGACGGCAGTTATCAGGCTATTGCAGCACATTTGAATATC
CCGATTGGCACCGTGCGTTCACGTCTGTCGCGTGCGCGCGTCACGCTGAAACAGTCAGTATTTTCTTAA

Protein sequence : 
MTEIHLQTTESTSVNDGLPLNIDWEGIFREHGRRVHHFIRKRVSHREDAEDLEQMTWLEVLRNRDKFAGASRPETWVFGI
ALNLVRNHFRLQSGRPRCDELEDDIILTQGDDPSHITEYQRLLNSTLNSIANLPEDTRRLLNMLVEKDGSYQAIAAHLNI
PIGTVRSRLSRARVTLKQSVFS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrpL AAD24681.1 sigma factor HrpL Virulence Hrp PAI Protein 5e-82 100
hrpL ABA47271.1 HrpL Virulence S-PAI Protein 1e-35 50
hrpL AAT96254.1 HrpL Virulence S-PAI Protein 5e-32 49
hrpL AAT96295.1 HrpL Virulence S-PAI Protein 5e-32 49
hrpL NP_791231.1 RNA polymerase sigma factor HrpL Virulence Hrp PAI Protein 2e-24 46
hrpL AAT96335.1 HrpL Virulence S-PAI Protein 8e-32 45
hrpL AAG33875.2 HrpL Virulence Hrp PAI Protein 8e-24 45
hrpL AAT96137.1 HrpL Virulence T-PAI Protein 1e-24 44
hrpL AAT96191.1 HrpL Virulence T-PAI Protein 1e-24 44
hrpL AAA17652.1 putative alternate sigma factor Virulence Hrp PAI Protein 1e-23 44
hrpL ABQ88350.1 HrpL Virulence Hrp PAI Protein 1e-23 44