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Name : hrcV (EAMY_0534) Accession : YP_003529892.1 Strain : Erwinia amylovora CFBP1430 Genome accession: NC_013961 Putative virulence/resistance : Virulence Product : type III secretion inner membrane protein HrcV Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG4789 EC number : - Position : 608945 - 611092 bp Length : 2148 bp Strand : - Note : Type III secretion inner membrane protein HrcV, FHIPEP family DNA sequence : ATGAGTTCTCTGTTTGTCTGGCTAAATCGCCTCGCCATCAGTGCGATGCAGCGCTCGGAAGTGGTGGGCGCTGCGATTGT CATGTCGATCGTTTTCATGATGATCATTCCGCTGCCCACCGGCCTGATCGACGTGCTGATTGCGCTCAATATCTGCATTT CATCACTGCTGATCGTGCTGGCGATGTATTTGCCAAAGCCGCTGGCCTTCTCGACGTTTCCCTCAGTCCTGCTGTTGACC ACCATGTTCAGGCTGGCGCTTTCGATCTCCACGACCCGCCAGATCCTGCTGCAACAGGATGCCGGGCACATCGTTGAAGC CTTCGGTAACTTCGTCGTCGGCGGTAATCTGGCGGTCGGCCTGGTGATCTTCCTGATCCTGACGGTGGTGAACTTCCTGG TGATCACCAAAGGCTCTGAACGCGTGGCTGAAGTCGCTGCGCGCTTTACCCTTGACGCCATGCCGGGCAAGCAGATGTCG ATAGACAGCGACCTGCGTGCGGGGCTGATTGAAGCGCATCAGGCGCGCCAGCGCCGCGAAAACCTGGCGAAAGAGAGCCA GCTGTTCGGCGCAATGGATGGCGCAATGAAGTTTGTTAAAGGCGACGCGATTGCCGGACTGGTGATTGTCTTTATCAATA TGATTGGCGGTTTTGCTATCGGCGTACTGCAAAACGGCATGGAGGCCGGTGCCGCAATGCATATCTATTCGGTGCTGACC ATCGGTGACGGCCTGATCGCCCAGATCCCCGCGCTGCTGATCTCACTGACCGCCGGGATGATCATCACCCGCGTCTCCGC CGACGGTCAGCAGGTTGATGCGAATATCGGCCGCGAAATCGCCGAACAGCTCACCAGCCAGCCCAAGGCCTGGATCATGT CGGCAGCGGGAATGCTGGGCTTCGCGCTGCTGCCCGGCATGCCAACGGCGGTATTTGTCATTATCAGCGCCATCGCGCTT GGCAGTGGGCTGTTCCAGCTGTGGCGCATCAAACAGCAGGATAGCCAGCAGCAGGCCGACGAGCTGCACGCGCAGCAGCT GGCGCCAGAAGATAACGGCTATCAGGATCTGCGCCGCTTCAACCCGACGCGCGCCTATCTGCTGCAATTCAGCCAGGAAC ATCTCAATAGCGAAGCCGCTGAATCACTGATTCAGCACATCCGCCGACTGCGCAACCGGCTGGTTTATCACTTTGGATTT ACCCTGCCCAGTTTTGATATCGAATTCTCACCGGCGTTGGCCGCTGACGAATTCCGCTTCTGCGTATATGAAATTCCCCT GGTGACCGCCACCTTCGCCGTCGAGCAGCTGGCGGTCAGAACAAGCAGCATTGAAATACATCTTGCCGATGGCGAAAGTG ACGGCCAGATCCAGCCCGGCCAGGCCGAACGCGATGAACATCACTGGTGCTGGCTTCCCCCGCAGCATCCGTTGCTGCAA CAGGAAGATCGGCGCTGCTGGAACGCACAACAGCTGATCATGCTACGGATGGAACAGGCTATCCACCAAAGCGGTGCGCA GTTTATCGGTTTGCAGGAGAGTAAATCGATCCTCAACTGGCTGGAGAGCGAACAGCCAGAGCTGGCGCAAGAGCTTCAGC GCATCATGCCGCTTTCCCGTTTTGCTGCGGTACTGCAACGTCTGGCCTCGGAACGTATTCCGCTGCGCTCGGTACGTACC ATTGCCGAAACGCTGATTGAGCACGGCCAGCATGAGCGCGACAGCGCTGCCCTGACCGACTTTGTGCGTATCGCGCTGAA AGAACATATCTGCCACCAGTATCAGCAGCCCAACGGGCTGAATGTCTGGCTGCTGACGCCGGAAACCGAAGAACTGCTGC GCGATTCGCTGCGTCAGGCCCAGAGCGAAACCTTCTTCTCGCTGGCCCAGGAATACGGCATCAACCTGCTGAATCAAATG CGCAGCGCCTTCCCGCCTTATGACAACCACCACGCGCTGATCCTCGTGGCCCAGGATTTACGCAGCCCGCTGCGCGCCCT GTTGAAAGACGAGTTTCATGCTGTACCGGTGCTGTCCTTTGCTGAATTAACCAGTAACGTCGCCATCAATGTGCTGGGAC GGCTCGATTTACAGCAGTCACCGCCAGAACTTCAGGAAAATGACCCATGCATGAATTACGCGTACTGA Protein sequence : MSSLFVWLNRLAISAMQRSEVVGAAIVMSIVFMMIIPLPTGLIDVLIALNICISSLLIVLAMYLPKPLAFSTFPSVLLLT TMFRLALSISTTRQILLQQDAGHIVEAFGNFVVGGNLAVGLVIFLILTVVNFLVITKGSERVAEVAARFTLDAMPGKQMS IDSDLRAGLIEAHQARQRRENLAKESQLFGAMDGAMKFVKGDAIAGLVIVFINMIGGFAIGVLQNGMEAGAAMHIYSVLT IGDGLIAQIPALLISLTAGMIITRVSADGQQVDANIGREIAEQLTSQPKAWIMSAAGMLGFALLPGMPTAVFVIISAIAL GSGLFQLWRIKQQDSQQQADELHAQQLAPEDNGYQDLRRFNPTRAYLLQFSQEHLNSEAAESLIQHIRRLRNRLVYHFGF TLPSFDIEFSPALAADEFRFCVYEIPLVTATFAVEQLAVRTSSIEIHLADGESDGQIQPGQAERDEHHWCWLPPQHPLLQ QEDRRCWNAQQLIMLRMEQAIHQSGAQFIGLQESKSILNWLESEQPELAQELQRIMPLSRFAAVLQRLASERIPLRSVRT IAETLIEHGQHERDSAALTDFVRIALKEHICHQYQQPNGLNVWLLTPETEELLRDSLRQAQSETFFSLAQEYGINLLNQM RSAFPPYDNHHALILVAQDLRSPLRALLKDEFHAVPVLSFAELTSNVAINVLGRLDLQQSPPELQENDPCMNYAY |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| hrcV | AAB05999.2 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 100 |
| hrcV | AAT96256.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | AAT96297.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | ABA47273.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 69 |
| hrcV | AAT96337.1 | HrcV | Virulence | S-PAI | Protein | 0.0 | 68 |
| hrcV | AAT96139.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 64 |
| hrcV | AAT96193.1 | HrcV | Virulence | T-PAI | Protein | 0.0 | 64 |
| hrcV | ABQ88352.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 63 |
| hrpI | AAA03015.1 | HrpI | Virulence | Hrp PAI | Protein | 0.0 | 63 |
| hrcV | NP_791229.1 | type III secretion protein HrcV | Virulence | Hrp PAI | Protein | 0.0 | 63 |
| hrcV | AAR25631.1 | type III secretion protein HrcV | Not tested | Not named | Protein | 0.0 | 63 |
| hrcV | AAG33877.1 | HrcV | Virulence | Hrp PAI | Protein | 0.0 | 62 |
| invA | AAS66860.1 | InvA | Not tested | SSR-2 | Protein | 2e-104 | 42 |
| YPO0266 | YP_002345347.1 | secretion system apparatus protein SsaV | Virulence | Not named | Protein | 8e-108 | 41 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| hrcV | YP_003529892.1 | type III secretion inner membrane protein HrcV | VFG0064 | Protein | 1e-133 | 43 |
| hrcV | YP_003529892.1 | type III secretion inner membrane protein HrcV | VFG0384 | Protein | 6e-131 | 41 |
