Gene Information

Name : hcrR (EAMY_0528)
Accession : YP_003529886.1
Strain : Erwinia amylovora CFBP1430
Genome accession: NC_013961
Putative virulence/resistance : Virulence
Product : Harpin secretion protein HrcR
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 604104 - 604757 bp
Length : 654 bp
Strand : -
Note : yscR: type III secretion apparatus protein, YscR/HrcR familyYop virulence translocation protein R, FliP family

DNA sequence : 
ATGAACACCGAGCAATTCGATCCGATGACTTTCGCCCTGTTCCTTGGGGCGCTGTCCTTGATCCCGATGTTAATGATCGT
CTGTACCTGTTTTTTGAAAATCTCCATGGTGCTGTTGATCACACGCAATGCCATCGGGGTGCAGCAGGTGCCGCCCAATA
TGGCGCTGTACGGCATAGCCCTGGCGGCCACGCTGTTCGTCATGGCCCCGGTATTCAACCAGATGCAGCAGCAGTTTAGC
CAGGTTCCCGCCGATTTATCCAGCATGGACAACCTGAAAACCAGCGTCACTAATGGGGTTGCACCATTACAAAAATTCAT
GACCCACAATACCGATCCCGACATCCTGATCCACCTGCAGGAAAACAGCGTACGCATGTGGCCAAAGGAGATGTCGGACA
GCGTCAATAAAGACAACCTGCTGCTGGTGATCCCCGCCTTTGTGCTGTCCGAATTGCAGGCCGGTTTTAAGATCGGTTTT
TTGATTTATATCCCGTTTATCGTTATCGATTTAATTGTCTCAAACGTGCTGCTGGCGCTGGGCATGCAGATGGTGGCCCC
AATGACCCTGTCATTGCCGCTGAAAATGCTGCTGTTTGTGCTAATCAATGGCTGGACCCGCCTGCTCGACGGCCTGTTTT
ACAGCTACCTGTGA

Protein sequence : 
MNTEQFDPMTFALFLGALSLIPMLMIVCTCFLKISMVLLITRNAIGVQQVPPNMALYGIALAATLFVMAPVFNQMQQQFS
QVPADLSSMDNLKTSVTNGVAPLQKFMTHNTDPDILIHLQENSVRMWPKEMSDSVNKDNLLLVIPAFVLSELQAGFKIGF
LIYIPFIVIDLIVSNVLLALGMQMVAPMTLSLPLKMLLFVLINGWTRLLDGLFYSYL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
hrcR AAB06005.2 HrcR Virulence Hrp PAI Protein 2e-98 100
hrcR ABQ88359.1 HrcR Virulence Hrp PAI Protein 1e-67 75
hrpW AAB05075.1 HrpW Virulence Hrp PAI Protein 1e-67 75
hrcR ABA47279.1 HrcR Virulence S-PAI Protein 3e-75 74
hrcR AAT96262.1 HrcR Virulence S-PAI Protein 1e-69 73
hrcR AAT96303.1 HrcR Virulence S-PAI Protein 1e-69 73
hrcR AAT96343.1 HrcR Virulence S-PAI Protein 1e-69 73
hrcR AAG33884.1 HrcR Virulence Hrp PAI Protein 1e-69 73
hrcR AAT96200.1 HrcR Virulence T-PAI Protein 4e-69 73
hrcR AAT96146.1 HrcR Virulence T-PAI Protein 3e-69 73
hrcR NP_791222.3 type III secretion protein HrcR Virulence Hrp PAI Protein 6e-67 72
YPO0270 YP_002345352.1 type III secretion system protein Virulence Not named Protein 1e-39 47
lscR AAO18040.1 LscR Virulence TTSS locus Protein 8e-42 47
escR AAC31528.1 L0049 Virulence LEE Protein 2e-39 45
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 1e-38 45
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 2e-39 45
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 2e-39 45
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 2e-39 45
unnamed AAL06354.1 EscR Virulence LEE Protein 1e-39 45
escR CAC81847.1 EscR protein Virulence LEE II Protein 2e-39 44
escR CAI43889.1 EscR protein Virulence LEE Protein 2e-39 44
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 2e-39 44
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 2e-39 44
escR AAC38369.1 EscR Virulence LEE Protein 1e-38 44
escR AAK26700.1 EscR Virulence LEE Protein 2e-39 44
escR AAL57527.1 EscR Virulence LEE Protein 2e-39 44
XC_3016 YP_244084.1 type III secretion system protein Virulence Hrp PAI Protein 6e-33 43
hrcR NP_636600.1 type III secretion system protein Virulence Hrp PAI Protein 6e-33 43
hrcR BAB07862.1 HrcR Virulence Hrp PAI Protein 5e-33 42
hrcR AAP34349.1 HrcR Virulence Hrp PAI Protein 5e-33 42
ssaR YP_216427.1 type III secretion system protein Virulence SPI-2 Protein 4e-37 42
ssaR NP_460384.1 type III secretion system protein Virulence SPI-2 Protein 4e-37 42
ssaR CAA68199.1 secretion system apparatus, SsaR Virulence SPI-2 Protein 3e-37 42
yscR NP_456109.1 putative type III secretion protein Virulence SPI-2 Protein 5e-37 42
yscR NP_805090.1 type III secretion system protein Virulence SPI-2 Protein 5e-37 42
hrcR YP_198720.1 type III secretion system protein Virulence Hrp PAI Protein 1e-32 42
hrcR AAD21321.1 HrcR Virulence Hrp PAI Protein 6e-33 41
hrcR NP_640757.1 type III secretion system protein Virulence Hrp PAI Protein 9e-33 41
hrcR YP_362153.1 type III secretion system protein Virulence Hrp PAI Protein 9e-33 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
hcrR YP_003529886.1 Harpin secretion protein HrcR VFG0044 Protein 1e-43 47
hcrR YP_003529886.1 Harpin secretion protein HrcR VFG0394 Protein 2e-42 46
hcrR YP_003529886.1 Harpin secretion protein HrcR VFG0188 Protein 2e-41 45
hcrR YP_003529886.1 Harpin secretion protein HrcR VFG0827 Protein 8e-40 45
hcrR YP_003529886.1 Harpin secretion protein HrcR VFG0715 Protein 6e-39 44
hcrR YP_003529886.1 Harpin secretion protein HrcR VFG0519 Protein 1e-37 42
hcrR YP_003529886.1 Harpin secretion protein HrcR VFG1773 Protein 1e-36 41