Gene Information

Name : basR (EAMY_0336)
Accession : YP_003529694.1
Strain : Erwinia amylovora CFBP1430
Genome accession: NC_013961
Putative virulence/resistance : Virulence
Product : transcriptional regulator Ycf27
Function : -
COG functional category : T : Signal transduction mechanisms
COG ID : COG0745
EC number : -
Position : 392276 - 393031 bp
Length : 756 bp
Strand : -
Note : probable transcriptional regulator ycf27 (OmpR-like protein), CheY-like, Response regulator receiver domain, cztR_silR_copR: heavy metal response regulator

DNA sequence : 
ATGCCGTTCCGCCGCAGGACCAGCGTCAGCGCCGTGTCCCCCTGGTGCGCTTCGAAAGTCGCCTGTATAAGGACGTTTAC
CGGAATAACTAAGCCGATGAAAATACTGATTGTAGAAGATGATACGCTGCTGCAACAGGGTCTGAACCTCGCCCTGACGG
GAGAAGGTTATGCCGTTGACTGCGCGGCGAATGCGGCCCAGGGGACGGCGTTTTTGCAAAGCGGCCAGTATAGCCTGGTG
GTGCTGGATCTTGGCCTGCCGGATAGAGATGGCGCCGATCTGCTACGTCAGTGGCGTAAGGAACAGCAGGATCTGCCGGT
GCTGATCCTCTCCGCACGTGATGCCCTGTCCGACCGAGTGGATGGACTGGATGCCGGTGCCGACGACTACCTGATGAAGC
CCTTTGCGCTGGCCGAGCTGAAAGCGCGCGTCCGCGCGCTGATCCGTCGCTATCAGGGCCAAAGCGATAACCTGTTGCAG
CATGGCGATATCACCCTCAATCTCTCTTCACAGCAGGTTGCTGTCGATCTTCAGCCGGTGGACGTGACGCCGAAGGAGTT
TTCTCTGTTGACCCGCCTGCTGATGCGTATTGGCCAGACGGTACACCGCGAAACTTTGCAGCAGGATCTCTATAGCTGGC
AGGATGACACCTCTTCAAATACACTTGAAGTTCATATGCATAATCTGCGGCGCAAACTGGGTAAAGATCGGATTAAAACG
GTACGCGGCGTGGGTTACCGGCTGGAAGAGCGCTGA

Protein sequence : 
MPFRRRTSVSAVSPWCASKVACIRTFTGITKPMKILIVEDDTLLQQGLNLALTGEGYAVDCAANAAQGTAFLQSGQYSLV
VLDLGLPDRDGADLLRQWRKEQQDLPVLILSARDALSDRVDGLDAGADDYLMKPFALAELKARVRALIRRYQGQSDNLLQ
HGDITLNLSSQQVAVDLQPVDVTPKEFSLLTRLLMRIGQTVHRETLQQDLYSWQDDTSSNTLEVHMHNLRRKLGKDRIKT
VRGVGYRLEER

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
armR AAN62112.1 putative response-regulator ArmR Not tested PAGI-2(C) Protein 4e-38 45
copR NP_460069.2 transcriptional regulatory protein YedW Not tested SPI-5 Protein 2e-29 41

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_003529694.1 transcriptional regulator Ycf27 BAC0487 Protein 4e-59 64
basR YP_003529694.1 transcriptional regulator Ycf27 NC_002516.2.879194.p Protein 9e-35 41

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
basR YP_003529694.1 transcriptional regulator Ycf27 VFG0473 Protein 6e-56 58
basR YP_003529694.1 transcriptional regulator Ycf27 VFG0596 Protein 9e-30 41