Gene Information

Name : dnaB (EAMY_3306)
Accession : YP_003532659.1
Strain : Erwinia amylovora CFBP1430
Genome accession: NC_013961
Putative virulence/resistance : Unknown
Product : replicative DNA helicase
Function : -
COG functional category : L : Replication, recombination and repair
COG ID : COG0305
EC number : -
Position : 3414807 - 3416222 bp
Length : 1416 bp
Strand : -
Note : DNA helicase, DnaB type

DNA sequence :
ATGGCAGGAAATAAACCCACCAACAAATCCTACGAAAACCGCGAGCCGCGTGACCGTCAGATGGAAGGTCTGAAGCTGCC
ACCGCATTCGCTGGAGGCAGAACAGTCGGTGTTGGGCGGTTTAATGCTGGATAACGAACGCTGGGATAACGTGTCGGAAC
GCGTGGTCGCGAAGGACTTCTTCAGTCGCCCGCACCGGATGATCTTTGCGGAAATGCAGCGCCTGCTTGAACAGAGTAAA
CCGATCGATCTCATTACCCTCTCCGAATCGATGGAAACCAAGGGCGAGCTGAGCATGGTCGGCGGCTTTGCCTATCTGGC
CGAGCTGTCAAAAAATACGCCAAGCGCGGCGAATATCGGAGCCTACGCCGATATCGTGCGTGAACGTGCGGTGGTGCGCG
AGATGATCGCCGTAGCGAATGAGATCGCCGATGCGGGATACGATCCGCAGGGGCGCAGCAGTGAGGATCTGCTCGATCTT
GCTGAATCACGCGTATTCCAGATCGCCGAAAACCGCGCCAATAAAGATGAAGGGCCGAAAAGCGTCGATCAAATCCTCGA
AGCCACTATCGCGCGTATCGAATCCTTGTATCAGACACCGCATGACGGCGTCACCGGGGTTGATACCGGCTACCAGGATC
TGAACAAGAAAACCGCCGGTCTTCAGCGTTCGGATCTGATTATCGTCGCCGCCCGACCGTCGATGGGTAAAACGACCTTC
GCCATGAATCTGTGCGAAAACGCGGCAATGTTGCAACAAAAACCGGTGCTGATCTTCAGCCTTGAGATGCCCGGCGAACA
GCTTATGATGCGCATGCTGGCATCGCTGTCACGCGTTGACCAAACCCGCATCCGTACCGGCCAGCTCGACGACGAGGACT
GGGCGCGTATCTCCAGCACTATGGGTATTCTGCTGGAGAAGAAGAACATGTTTATTGATGATTCTTCCGGCTTGACGCCG
ACCGAAGTGCGTTCGCGCGCGCGCCGTATATTCCGCGAGCACGGTGGGCTTAGCCTGATTATGATCGACTACCTGCAGCT
GATGCGTGTTCCGGCACTGTCCGATAACCGCACACTGGAAATCGCCGAGATATCGCGCTCGCTGAAAGCGCTGGCAAAAG
AGCTACAGGTGCCGGTGGTGGCGCTGTCGCAGCTTAACCGCTCGCTGGAGCAGCGCGCCGATAAGCGCCCGGTCAACTCC
GACCTGCGTGAATCCGGCTCTATCGAGCAGGATGCCGACTTAATCATGTTTATCTATCGCGATGAGGTTTACCACGAGAA
CAGCGATTTGAAAGGCGTAGCGGAAATTATCCTGGGTAAACAGCGTAACGGCCCAATCGGTACCGTGCGCCTGACCTTTA
ACGGGCAGTGGTCACGTTTTGATAATTACGCCGGGCCACAGTACGACGACGAATAA

Protein sequence :
MAGNKPTNKSYENREPRDRQMEGLKLPPHSLEAEQSVLGGLMLDNERWDNVSERVVAKDFFSRPHRMIFAEMQRLLEQSK
PIDLITLSESMETKGELSMVGGFAYLAELSKNTPSAANIGAYADIVRERAVVREMIAVANEIADAGYDPQGRSSEDLLDL
AESRVFQIAENRANKDEGPKSVDQILEATIARIESLYQTPHDGVTGVDTGYQDLNKKTAGLQRSDLIIVAARPSMGKTTF
AMNLCENAAMLQQKPVLIFSLEMPGEQLMMRMLASLSRVDQTRIRTGQLDDEDWARISSTMGILLEKKNMFIDDSSGLTP
TEVRSRARRIFREHGGLSLIMIDYLQLMRVPALSDNRTLEIAEISRSLKALAKELQVPVVALSQLNRSLEQRADKRPVNS
DLRESGSIEQDADLIMFIYRDEVYHENSDLKGVAEIILGKQRNGPIGTVRLTFNGQWSRFDNYAGPQYDDE

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
PMI2640 YP_002152342.1 DNA helicase Not tested Not named Protein 1e-98 54
api2 CAF28476.1 putative DNA binding protein with DNA-dependent ATPase activity Not tested YAPI Protein 6e-105 53
dnaB2 YP_001402701.1 replicative DNA helicase Not tested YAPI Protein 2e-104 53
dnaB2 YP_001007676.1 putative DNA helicase Not tested YAPI Protein 1e-104 53
unnamed ABR13456.1 replicative DNA helicase Not tested PAGI-5 Protein 3e-100 50
STY4522 NP_458617.1 DNA helicase Not tested SPI-7 Protein 1e-90 50
t4227 NP_807829.1 DNA helicase Not tested SPI-7 Protein 1e-90 50
dnaB CAI36044.1 replicative DNA helicase DnaB Not tested PPHGI-1 Protein 1e-84 48
dnaB1 YP_005176258.1 replicative DNA helicase Not tested ICEPmu1 Protein 1e-78 44