Gene Information

Name : soxS1 (EAMY_3287)
Accession : YP_003532640.1
Strain : Erwinia amylovora CFBP1430
Genome accession: NC_013961
Putative virulence/resistance : Resistance
Product : HTH-type transcriptional regulator SoxS
Function : -
COG functional category : K : Transcription
COG ID : COG4977
EC number : -
Position : 3394429 - 3394854 bp
Length : 426 bp
Strand : +
Note : Bacterial regulatory helix-turn-helix proteins, AraC family

DNA sequence : 
ATGCATGACGACATCATCAACACCCTGACCAACTGGATCGACAATAATCTGGACAAAGCCCTGTCGATTGAGGAAGTGGC
TGCAAAATCAGGCTACTCAAAGTGGCATTTACAGCGAATGTTCCGCGCGGTGACAAAACAGACGTTGGGTGGATATATCC
GGGAACGCCGTTTAATGCGGGCTGCCGAAGCGCTGCGCCAGAGTCAACGCCCGGTTTTTGATATCGCCATGCAATATGGT
TACGATTCGCAGCAAACTTTCTCCCGGGTATTTCGTCGTCAGTTTTCCCAGACGCCAACGGCTTACCGTAATACCATGCG
CCGCCAGAGGCTACAGCGCAGCAGCTGGAATTTTGACTGCGGCGACTACCCGGCCAGCAGCTTTCAACCGCAGCGAAATG
ACAAAAGCTGCCCAATCTGTAACTAA

Protein sequence : 
MHDDIINTLTNWIDNNLDKALSIEEVAAKSGYSKWHLQRMFRAVTKQTLGGYIRERRLMRAAEALRQSQRPVFDIAMQYG
YDSQQTFSRVFRRQFSQTPTAYRNTMRRQRLQRSSWNFDCGDYPASSFQPQRNDKSCPICN

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
soxS YP_219131.1 DNA-binding transcriptional regulator SoxS Not tested SPI-4 Protein 6e-27 64
tetD AEA34665.1 tetracycline resistance protein D Not tested Not named Protein 5e-18 47
tetD AAL08447.1 putative transcriptional regulator TetD Not tested SRL Protein 5e-18 47

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS CP000647.1.gene4499. Protein 2e-27 67
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS CP001918.1.gene327.p Protein 2e-27 65
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS BAC0371 Protein 5e-27 64
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS CP001138.1.gene4488. Protein 2e-27 64
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS NC_002695.1.914293.p Protein 5e-27 64
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS CP000034.1.gene4505. Protein 1e-26 63
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS CP000647.1.gene1624. Protein 5e-19 48
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS CP001138.1.gene612.p Protein 4e-21 47
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS CP001918.1.gene2033. Protein 7e-19 47
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS NC_010558.1.6276025. Protein 2e-18 47
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS NC_002695.1.917339.p Protein 5e-19 46
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS CP001138.1.gene1637. Protein 5e-19 46
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS BAC0560 Protein 5e-19 46
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS CP000034.1.gene1596. Protein 4e-19 46

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS VFG0585 Protein 2e-27 64
soxS1 YP_003532640.1 HTH-type transcriptional regulator SoxS VFG1038 Protein 2e-18 47