Gene Information

Name : kpsC (EAMY_2648)
Accession : YP_003532003.1
Strain : Erwinia amylovora CFBP1430
Genome accession: NC_013961
Putative virulence/resistance : Virulence
Product : capsule polysaccharide export protein kpsc
Function : -
COG functional category : M : Cell wall/membrane/envelope biogenesis
COG ID : COG3563
EC number : -
Position : 2731630 - 2733654 bp
Length : 2025 bp
Strand : -
Note : Capsule polysaccharide biosynthesis, TC 9.A.41.1.2 Capsule polysaccharide export protein kpsC

DNA sequence : 
ATGATTGGCATTTATTCTTCCGGCATCTGGCGTATTCCCCACCTGGCTAACTTTCTGCGTGAGCGTTGCCACAAAGTCGC
GCTGCGCCATGCTCTGCCCGCAGAGGTGGATGCAATAGCCGTATGGGGTTATCGTCCATCAGGTAAAAAAGAGGTTCGGG
CTGCCCAATCCGCCGGCAAGACCCTGATGCGACTAGAGGACGGCTTTATCCGTTCGCAGGGGCTGGGAGTAGAGGGCGCG
TCGCCATTTTCCATGGTCGTTGATCGTCTTGGCATGTACTACGATGCCGGGCGCCCCAGTACGCTTGAGCGCATGATCCA
GGACACGCCAGGTAACAGCGTGCTGGCGGCGGAAGCGGAAGATGCCATGCGGACCATTGTTAACGAAGATCTCTCCAAAT
TTAATCACGCTCTGCCGTTTAAACGCACAACGCCGATACCGTCTGAAGTCGTGCTGGTGGTGGATCAAACCGCTGGCGAT
CTGTCAGTCAAGTGGGGCGGTGGCGGCGCGACTGATTTTAGCCGCATGGTAAATGCAGCGCTGAGCGAAAATCCTAACGC
GACAATCTGGGTCAAGGTTCATCCTGATGTCCTGAGTGGTTCCAGACAGGGCTATTTAGGTGCAGTAGAGTTGGATGACC
GGGTCCACCTGTTCACCGAGGATGTCAGCCCGCAATCTTTGCTGCGTGTAGTGACTAAAGTCTATGTTGTTACCTCGCAG
TTAGGTTTCGAGGCGTTGCTGGCGGGTAAACCGGTAGTGTGTTTCGGTCTGCCGTGGTATGCCGCCTGGGGGCTGACCGA
CGACCGTCACTCTGGTGCCGTCTGCCTGGCGCAACGGCGGGGGCGCGCCTCGCTGACCGCGCTGTTTACCGCTGCCTATT
TGCGCTACAGCCGCTATATTCATCCCTCAAACGGGCAACCTGCAAGACTGAGCGAAGTCCTTGAATGGCTGGTGCGTGAG
CGCCAGCACGGCCTGCAACGTGTCGGACATTTATGGGCACCCGGGCTTCCGCTGTGGAAAGCAACGATGGTGAAACCGTT
TTTGCACACGCGTGATAATCAGCTGACCATGGCCAGGCGTTGCCGACCGGCAGAAGCTTGCGTGGTTTGGGGGATCAAAG
GAGAGCGCCGCTGGAGCAAGCTGGCACAACAACGCGGTATTCCCGTCTGGCGCATGGAAAATGGCCTTTTACGTTCCAGC
GGACACGGATCGGCTCAGAAGCCGCCGCTGTCGCTTGTGCTTGATAAACAGGGCATCTATTACGATGCGCGTCGCCCGAG
CGATCTGGAACAGATGCTGAATAACAGCCAGCTTTCAGCGCAGCAAGCGACAAGAGCGCAGCGGCTTCATCAACGGCTGG
TGGAGCAGCGCACCGGCAAACAAAACGTTGGCCATTTCCGGCTGCCTGACGCCGCAGCTCATCGCCTGGCGATACTGGTA
CTGGGGCAGGTGGAAGACGATATTTCGCTCGCCACCGGAGCGCTCGGGGTGCGTACCAATCATGATTTATTACATCGCGT
GCGCGAAGATTATCCCCAGGCATTTATTTTTTATAAGCCACATCCGGACGCGCTGACGGGAGATATGAAGGGGGATATTT
CACCTGATGCACTGAGCGGCCTGGCGGATTTCGACGCGCGCGACGTCGATATTATCCAGTGCATCATGCAGGCAGATGAA
GTGCATACCATGACTTCGCTGTGGGGATTTGAAGCGCTGCTGCACGGAAAACGTGTTCATTGCTACGGATTGCCTTTCTA
TGCAGGTTGGGGGCTAACGGACGATGAGTTTCCTTGCGCCCGTCGCACGCGCAAACTGACGCGAAACGATCTGATTTATC
AGGGACTGATCGCTTATCCCACCTATCTTGATCCTCATAACTATACGGTGATTAGCCCTGAGGATGCGGTGGAAATATTA
GTAGAAACGCCGCATGGCAGGCCGTGCACCATGAAAAGAATTCGCCGCAGGATCCGGCACTATTTCCGCCAGCTAATGAT
GTTTATCAAGCTCAAGCTGTTCTGA

Protein sequence : 
MIGIYSSGIWRIPHLANFLRERCHKVALRHALPAEVDAIAVWGYRPSGKKEVRAAQSAGKTLMRLEDGFIRSQGLGVEGA
SPFSMVVDRLGMYYDAGRPSTLERMIQDTPGNSVLAAEAEDAMRTIVNEDLSKFNHALPFKRTTPIPSEVVLVVDQTAGD
LSVKWGGGGATDFSRMVNAALSENPNATIWVKVHPDVLSGSRQGYLGAVELDDRVHLFTEDVSPQSLLRVVTKVYVVTSQ
LGFEALLAGKPVVCFGLPWYAAWGLTDDRHSGAVCLAQRRGRASLTALFTAAYLRYSRYIHPSNGQPARLSEVLEWLVRE
RQHGLQRVGHLWAPGLPLWKATMVKPFLHTRDNQLTMARRCRPAEACVVWGIKGERRWSKLAQQRGIPVWRMENGLLRSS
GHGSAQKPPLSLVLDKQGIYYDARRPSDLEQMLNNSQLSAQQATRAQRLHQRLVEQRTGKQNVGHFRLPDAAAHRLAILV
LGQVEDDISLATGALGVRTNHDLLHRVREDYPQAFIFYKPHPDALTGDMKGDISPDALSGLADFDARDVDIIQCIMQADE
VHTMTSLWGFEALLHGKRVHCYGLPFYAGWGLTDDEFPCARRTRKLTRNDLIYQGLIAYPTYLDPHNYTVISPEDAVEIL
VETPHGRPCTMKRIRRRIRHYFRQLMMFIKLKLF

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
kpsC YP_854335.1 capsule polysaccharide export protein KpsC Not tested PAI I APEC-O1 Protein 0.0 58
kpsC AAZ04470.1 capsule polysaccharide export protein Virulence PAI I APEC-O1 Protein 0.0 58
lipA NP_273145.1 capsule polysaccharide modification protein Not tested IHT-A Protein 3e-128 45

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
kpsC YP_003532003.1 capsule polysaccharide export protein kpsc VFG0704 Protein 1e-113 45
kpsC YP_003532003.1 capsule polysaccharide export protein kpsc VFG0692 Protein 2e-127 45
kpsC YP_003532003.1 capsule polysaccharide export protein kpsc VFG0259 Protein 1e-128 45