Gene Information

Name : sitA (EAMY_2160)
Accession : YP_003531518.1
Strain : Erwinia amylovora CFBP1430
Genome accession: NC_013961
Putative virulence/resistance : Virulence
Product : iron ABC transporter substrate-binding protein
Function : -
COG functional category : P : Inorganic ion transport and metabolism
COG ID : COG0803
EC number : -
Position : 2200733 - 2201644 bp
Length : 912 bp
Strand : +
Note : Periplasmic solute binding protein, TC 3.A.1.15.7 SitA (Salmonella iron transporter: fur regulated) (Iron transport protein, periplasmic-binding protein)

DNA sequence :
ATGTCATATCTGCATCGATTAAATGGATGGTTATGTGCACTGGCCATCGCTGCGCTGCCGCTGGCACCCGCGCTGGCGCA
AGATAAATTTAAGGTGATCACCACCTTTACCATCATTGCCGATATGGCACGGAACGTTGCCGGAGATGCCGCCGAGGTAG
CATCGATTACCAAACCAGGTGCCGAGATCCATGAATATCAGCCAACCCCTGGTGATATCAAACGCGCACAGGGTGCGCAG
CTGATCCTGGCCAACGGCCTTAGCCTGGAATTATGGTTTAATCGCTTTTACCAGCACCTGTCCGGCGTGCCTGAAGTGGT
GGTTTCCGGCGGGATTATTCCAATGGGCATCAGCGAAGGCCCTTATAGCGGTAAACCTAATCCTCATGCGTGGATGTCGC
CCGACAATGCGCTGATCTACGTGGATAATATTCGCGATGCGCTGGTGAAATATGATCCTGTTCATGCCGAAACCTATCGT
AAAAATGCTGCTGTCTATAAAGATAAAATCAGCGCGGCCATCGCCCCGGTACAACAGGCGCTGGCACAGCTGCCCGCAGA
CAAGCGCTGGCTGGTTACTAGTGAAGGCGCATTCTCCTATCTGACGCGTGATTTTGGTTTGCAGGAACTGTATTTGTGGC
CTGTTAATGCCGATCAGCAGGGAACGCCGCAGCAGGTGCGCAAAGTCATTGACAAAGTGAAGCAATATCAAATTCCGGCC
GTATTCAGCGAAAGTACCGTATCCGATAAAGCCGCCCGTCAGGTTGCACGTGAGACCGGCAGCCACTACGGCGGCGTGCT
GTACGTTGATTCGCTAAGCGCCGCAGATGGCCCGGTTCCGACCTATCTCGACCTGCTGCGCGTTACCAGCGAAACGATAG
TTAACGGTATTCATCAGGGGTTGGCTAAATGA

Protein sequence :
MSYLHRLNGWLCALAIAALPLAPALAQDKFKVITTFTIIADMARNVAGDAAEVASITKPGAEIHEYQPTPGDIKRAQGAQ
LILANGLSLELWFNRFYQHLSGVPEVVVSGGIIPMGISEGPYSGKPNPHAWMSPDNALIYVDNIRDALVKYDPVHAETYR
KNAAVYKDKISAAIAPVQQALAQLPADKRWLVTSEGAFSYLTRDFGLQELYLWPVNADQQGTPQQVRKVIDKVKQYQIPA
VFSESTVSDKAARQVARETGSHYGGVLYVDSLSAADGPVPTYLDLLRVTSETIVNGIHQGLAK

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
sitA YP_217781.1 iron transporter: fur regulated Virulence SPI-1 Protein 9e-105 78
sitA NP_457255.1 Iron transport protein, periplasmic-binding protein Virulence SPI-1 Protein 8e-105 78
sitA NP_806464.1 iron transporter periplasmic-binding protein Virulence SPI-1 Protein 8e-105 78
sitA NP_461782.1 periplasmic binding protein Virulence SPI-1 Protein 8e-105 78
sitA AAD41065.1 SitA Virulence centisome 63 pathogenicity island Protein 6e-105 78

• Homologs from CARD and BacMet (resistance genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA YP_003531518.1 iron ABC transporter substrate-binding protein BAC0349 Protein 4e-105 78
sitA YP_003531518.1 iron ABC transporter substrate-binding protein BAC0439 Protein 6e-83 64

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
sitA YP_003531518.1 iron ABC transporter substrate-binding protein VFG0525 Protein 3e-105 78