Gene Information

Name : spaP3 (EAMY_1586)
Accession : YP_003530944.1
Strain : Erwinia amylovora CFBP1430
Genome accession: NC_013961
Putative virulence/resistance : Virulence
Product : surface presentation of antigens protein SpaP
Function : -
COG functional category : U : Intracellular trafficking, secretion and vesicular transport
COG ID : COG4790
EC number : -
Position : 1647607 - 1648296 bp
Length : 690 bp
Strand : +
Note : yscR: type III secretion apparatus protein, YscR/HrcR family. Similar to flagellar FliP protein. Possible N-term signal sequence

DNA sequence : 
ATGATATGGATATCTACAATGCTTAATAATGATATTTCTTTAATTGCGGTGCTCTCATTTTTCACTCTGCTCCCATTCAT
TATCGCAGGTGGTACTTGTTTCATCAAATTTTCAATCGTATTAGTGATGATGCGAAATGCCTTAGGTATACAGCAAGTAC
CTTCTAACCTTACTCTGAATGGTATTTCGCTTATTTTAACTGCATTTATAATGATGCCTGTATGCCAGCGTATTATTGAT
GACGTCGAAACGAGACATATTGATTTTAATCAAAGCAGCGCTTTTTCACAGTTTGTAAATGATGGTTTGGACGGTTATCG
TGAATATCTTGTGCATTATTCTGACCATGATCTGATTCATTTCTTTAATAAGGTTCAACAGAGGAATAATGATGATAATG
TAGCCAATACCTTTGAACATGAATTGACTAGATTGCCACTGATGACCCTGATGCCTGCTTACGCACTAAGTGAAATTCAG
AGTGCCTTCAGGATTGCCTTTTATATTTATATCCCATTTGTCGTGATTGATATGGTTGTATCTAGTATTTTACTTGCATT
AGGCATGATGATGATGAGTCCGGTGACAATTTCGATTCCCATAAAACTAATCCTTTTTGTTGCAATGGATGGTTGGAGCT
TGCTGACTAAAGGGCTTATTGCACAATATGCTGAACTTATGACATCATGA

Protein sequence : 
MIWISTMLNNDISLIAVLSFFTLLPFIIAGGTCFIKFSIVLVMMRNALGIQQVPSNLTLNGISLILTAFIMMPVCQRIID
DVETRHIDFNQSSAFSQFVNDGLDGYREYLVHYSDHDLIHFFNKVQQRNNDDNVANTFEHELTRLPLMTLMPAYALSEIQ
SAFRIAFYIYIPFVVIDMVVSSILLALGMMMMSPVTISIPIKLILFVAMDGWSLLTKGLIAQYAELMTS

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
ysaR AAS66846.1 YsaR Not tested SSR-1 Protein 9e-72 69
spaP NP_311752.1 surface presentation of antigens protein SpaP Not tested LIM Protein 3e-66 59
spaP NP_457284.1 secretory protein (associated with virulence) Virulence SPI-1 Protein 5e-57 58
spaP NP_806493.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 5e-57 58
spaP YP_217809.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-57 58
spaP NP_461811.1 surface presentation of antigens protein SpaP Virulence SPI-1 Protein 2e-57 58
epaP AAZ31293.1 EpaP Virulence ETT2 Protein 8e-65 58
spaP AAS66865.1 SpaP Not tested SSR-2 Protein 2e-59 50
escR AAC31528.1 L0049 Virulence LEE Protein 3e-41 43
escR ACU09473.1 type III secretion system protein EscR Virulence LEE Protein 3e-41 43
escR YP_003236103.1 T3SS structure protein EscR Virulence LEE Protein 4e-41 43
escR AAC38369.1 EscR Virulence LEE Protein 2e-40 43
escR NP_290283.1 type III secretion system protein Virulence LEE Protein 4e-41 43
ECs4583 NP_312610.1 type III secretion system protein Virulence LEE Protein 2e-41 43
escR AAL57527.1 EscR Virulence LEE Protein 3e-41 42
escR CAC81847.1 EscR protein Virulence LEE II Protein 3e-41 42
escR CAI43889.1 EscR protein Virulence LEE Protein 3e-41 42
escR YP_003223490.1 T3SS structure protein EscR Virulence LEE Protein 5e-41 42
escR YP_003232138.1 type III secretion system protein Virulence LEE Protein 5e-41 42
escR AAK26700.1 EscR Virulence LEE Protein 3e-41 42
unnamed AAL06354.1 EscR Virulence LEE Protein 3e-40 42

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
spaP3 YP_003530944.1 surface presentation of antigens protein SpaP VFG0551 Protein 7e-58 58
spaP3 YP_003530944.1 surface presentation of antigens protein SpaP VFG1773 Protein 2e-63 57
spaP3 YP_003530944.1 surface presentation of antigens protein SpaP VFG2455 Protein 7e-60 56
spaP3 YP_003530944.1 surface presentation of antigens protein SpaP VFG1012 Protein 1e-58 55
spaP3 YP_003530944.1 surface presentation of antigens protein SpaP VFG0827 Protein 2e-41 43
spaP3 YP_003530944.1 surface presentation of antigens protein SpaP VFG0715 Protein 1e-40 43
spaP3 YP_003530944.1 surface presentation of antigens protein SpaP VFG0394 Protein 6e-37 41